Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021010
(652 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U50067-4|AAA93439.3| 1144|Caenorhabditis elegans Sensory axon gu... 68 7e-12
U50067-3|AAZ32801.1| 1147|Caenorhabditis elegans Sensory axon gu... 68 7e-12
U50067-2|AAY86218.1| 1328|Caenorhabditis elegans Sensory axon gu... 68 7e-12
U50067-1|AAZ32800.1| 1331|Caenorhabditis elegans Sensory axon gu... 68 7e-12
AB206670-1|BAD97389.1| 1147|Caenorhabditis elegans SAX-7 SHORTFO... 68 7e-12
AB206669-1|BAD97388.1| 1331|Caenorhabditis elegans SAX-7 LONGFOR... 68 7e-12
EF584655-1|ABQ57413.1| 1187|Caenorhabditis elegans LAD-2 long is... 66 3e-11
AF456361-1|AAL60232.1| 1187|Caenorhabditis elegans immunoglobuli... 66 3e-11
AC024817-49|AAF59572.3| 1187|Caenorhabditis elegans L1 cam adhes... 66 3e-11
AC024778-2|AAF60566.2| 2325|Caenorhabditis elegans Neuronal igca... 39 0.004
AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin for... 30 1.6
AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin for... 30 1.6
AF040648-6|AAO91708.1| 908|Caenorhabditis elegans Lethal protei... 30 1.6
AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protei... 30 1.6
AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protei... 30 1.6
U80438-4|AAB37634.2| 1415|Caenorhabditis elegans Uncoordinated p... 29 2.2
U70618-1|AAB17088.1| 1415|Caenorhabditis elegans unc-40 protein. 29 2.2
AC024776-7|AAK68469.1| 411|Caenorhabditis elegans Nuclear pore ... 29 2.2
M22751-1|AAA28106.1| 211|Caenorhabditis elegans protein ( C.ele... 29 2.9
L15201-2|AAA27945.2| 200|Caenorhabditis elegans Male abnormal p... 29 2.9
AF277990-1|AAG00458.1| 200|Caenorhabditis elegans MAB-5 protein. 29 2.9
Z54236-7|CAA90982.1| 1471|Caenorhabditis elegans Hypothetical pr... 28 6.6
U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p... 28 6.6
U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr... 28 6.6
>U50067-4|AAA93439.3| 1144|Caenorhabditis elegans Sensory axon
guidance protein 7,isoform a protein.
Length = 1144
Score = 67.7 bits (158), Expect = 7e-12
Identities = 32/77 (41%), Positives = 46/77 (59%)
Frame = +2
Query: 20 FQPYKIKVTEVNFKGTSNVTPIEVIGWSGEDRHTQAPGNLSLSQVTSGTSAVLSWTPVAP 199
FQPY+++V VN +G +NV P V G +GE + P L + + SGT+ L+W V P
Sbjct: 646 FQPYEVQVQAVNSEGRTNVVPETVEGRTGEGVPSSIPSGLRVLE-KSGTTVTLAWNGVDP 704
Query: 200 ESLRGHFKGYKIQTWTD 250
++ G+F GYKI W D
Sbjct: 705 QTANGNFTGYKITYWVD 721
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/32 (59%), Positives = 22/32 (68%)
Frame = +1
Query: 358 NGSFNGPASDTLSFVTPEGQPSTVRSFEAYPI 453
NG+ G ASDT+ F T EG PS VRS AYP+
Sbjct: 788 NGAHEGSASDTIDFQTDEGVPSPVRSLRAYPM 819
>U50067-3|AAZ32801.1| 1147|Caenorhabditis elegans Sensory axon
guidance protein 7,isoform d protein.
Length = 1147
Score = 67.7 bits (158), Expect = 7e-12
Identities = 32/77 (41%), Positives = 46/77 (59%)
Frame = +2
Query: 20 FQPYKIKVTEVNFKGTSNVTPIEVIGWSGEDRHTQAPGNLSLSQVTSGTSAVLSWTPVAP 199
FQPY+++V VN +G +NV P V G +GE + P L + + SGT+ L+W V P
Sbjct: 646 FQPYEVQVQAVNSEGRTNVVPETVEGRTGEGVPSSIPSGLRVLE-KSGTTVTLAWNGVDP 704
Query: 200 ESLRGHFKGYKIQTWTD 250
++ G+F GYKI W D
Sbjct: 705 QTANGNFTGYKITYWVD 721
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/32 (59%), Positives = 22/32 (68%)
Frame = +1
Query: 358 NGSFNGPASDTLSFVTPEGQPSTVRSFEAYPI 453
NG+ G ASDT+ F T EG PS VRS AYP+
Sbjct: 788 NGAHEGSASDTIDFQTDEGVPSPVRSLRAYPM 819
>U50067-2|AAY86218.1| 1328|Caenorhabditis elegans Sensory axon
guidance protein 7,isoform b protein.
Length = 1328
Score = 67.7 bits (158), Expect = 7e-12
Identities = 32/77 (41%), Positives = 46/77 (59%)
Frame = +2
Query: 20 FQPYKIKVTEVNFKGTSNVTPIEVIGWSGEDRHTQAPGNLSLSQVTSGTSAVLSWTPVAP 199
FQPY+++V VN +G +NV P V G +GE + P L + + SGT+ L+W V P
Sbjct: 830 FQPYEVQVQAVNSEGRTNVVPETVEGRTGEGVPSSIPSGLRVLE-KSGTTVTLAWNGVDP 888
Query: 200 ESLRGHFKGYKIQTWTD 250
++ G+F GYKI W D
Sbjct: 889 QTANGNFTGYKITYWVD 905
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/32 (59%), Positives = 22/32 (68%)
Frame = +1
Query: 358 NGSFNGPASDTLSFVTPEGQPSTVRSFEAYPI 453
NG+ G ASDT+ F T EG PS VRS AYP+
Sbjct: 972 NGAHEGSASDTIDFQTDEGVPSPVRSLRAYPM 1003
>U50067-1|AAZ32800.1| 1331|Caenorhabditis elegans Sensory axon
guidance protein 7,isoform c protein.
Length = 1331
Score = 67.7 bits (158), Expect = 7e-12
Identities = 32/77 (41%), Positives = 46/77 (59%)
Frame = +2
Query: 20 FQPYKIKVTEVNFKGTSNVTPIEVIGWSGEDRHTQAPGNLSLSQVTSGTSAVLSWTPVAP 199
FQPY+++V VN +G +NV P V G +GE + P L + + SGT+ L+W V P
Sbjct: 830 FQPYEVQVQAVNSEGRTNVVPETVEGRTGEGVPSSIPSGLRVLE-KSGTTVTLAWNGVDP 888
Query: 200 ESLRGHFKGYKIQTWTD 250
++ G+F GYKI W D
Sbjct: 889 QTANGNFTGYKITYWVD 905
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/32 (59%), Positives = 22/32 (68%)
Frame = +1
Query: 358 NGSFNGPASDTLSFVTPEGQPSTVRSFEAYPI 453
NG+ G ASDT+ F T EG PS VRS AYP+
Sbjct: 972 NGAHEGSASDTIDFQTDEGVPSPVRSLRAYPM 1003
>AB206670-1|BAD97389.1| 1147|Caenorhabditis elegans SAX-7 SHORTFORM
protein.
Length = 1147
Score = 67.7 bits (158), Expect = 7e-12
Identities = 32/77 (41%), Positives = 46/77 (59%)
Frame = +2
Query: 20 FQPYKIKVTEVNFKGTSNVTPIEVIGWSGEDRHTQAPGNLSLSQVTSGTSAVLSWTPVAP 199
FQPY+++V VN +G +NV P V G +GE + P L + + SGT+ L+W V P
Sbjct: 646 FQPYEVQVQAVNSEGRTNVVPETVEGRTGEGVPSSIPSGLRVLE-KSGTTVTLAWNGVDP 704
Query: 200 ESLRGHFKGYKIQTWTD 250
++ G+F GYKI W D
Sbjct: 705 QTANGNFTGYKITYWVD 721
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/32 (59%), Positives = 22/32 (68%)
Frame = +1
Query: 358 NGSFNGPASDTLSFVTPEGQPSTVRSFEAYPI 453
NG+ G ASDT+ F T EG PS VRS AYP+
Sbjct: 788 NGAHEGSASDTIDFQTDEGVPSPVRSLRAYPM 819
>AB206669-1|BAD97388.1| 1331|Caenorhabditis elegans SAX-7 LONGFORM
protein.
Length = 1331
Score = 67.7 bits (158), Expect = 7e-12
Identities = 32/77 (41%), Positives = 46/77 (59%)
Frame = +2
Query: 20 FQPYKIKVTEVNFKGTSNVTPIEVIGWSGEDRHTQAPGNLSLSQVTSGTSAVLSWTPVAP 199
FQPY+++V VN +G +NV P V G +GE + P L + + SGT+ L+W V P
Sbjct: 830 FQPYEVQVQAVNSEGRTNVVPETVEGRTGEGVPSSIPSGLRVLE-KSGTTVTLAWNGVDP 888
Query: 200 ESLRGHFKGYKIQTWTD 250
++ G+F GYKI W D
Sbjct: 889 QTANGNFTGYKITYWVD 905
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/32 (59%), Positives = 22/32 (68%)
Frame = +1
Query: 358 NGSFNGPASDTLSFVTPEGQPSTVRSFEAYPI 453
NG+ G ASDT+ F T EG PS VRS AYP+
Sbjct: 972 NGAHEGSASDTIDFQTDEGVPSPVRSLRAYPM 1003
>EF584655-1|ABQ57413.1| 1187|Caenorhabditis elegans LAD-2 long isoform
protein.
Length = 1187
Score = 65.7 bits (153), Expect = 3e-11
Identities = 31/81 (38%), Positives = 45/81 (55%)
Frame = +2
Query: 2 VTNTPTFQPYKIKVTEVNFKGTSNVTPIEVIGWSGEDRHTQAPGNLSLSQVTSGTSAVLS 181
+ + PTF+ Y I+V VN G S V P GWSGED +AP + + + T+ +
Sbjct: 782 IRDQPTFRKYLIQVQSVNSVGPSIVEPEIHHGWSGEDVPDEAPRDFHIDTQINFTTINFT 841
Query: 182 WTPVAPESLRGHFKGYKIQTW 244
W PV ++ GHF GY+I+ W
Sbjct: 842 WNPVDANTVNGHFVGYEIEYW 862
>AF456361-1|AAL60232.1| 1187|Caenorhabditis elegans immunoglobulin
domain-containingprotein Y54G2A.25 protein.
Length = 1187
Score = 65.7 bits (153), Expect = 3e-11
Identities = 31/81 (38%), Positives = 45/81 (55%)
Frame = +2
Query: 2 VTNTPTFQPYKIKVTEVNFKGTSNVTPIEVIGWSGEDRHTQAPGNLSLSQVTSGTSAVLS 181
+ + PTF+ Y I+V VN G S V P GWSGED +AP + + + T+ +
Sbjct: 782 IRDQPTFRKYLIQVQSVNSVGPSIVEPEIHHGWSGEDVPDEAPRDFHIDTQINFTTINFT 841
Query: 182 WTPVAPESLRGHFKGYKIQTW 244
W PV ++ GHF GY+I+ W
Sbjct: 842 WNPVDANTVNGHFVGYEIEYW 862
>AC024817-49|AAF59572.3| 1187|Caenorhabditis elegans L1 cam adhesion
molecule homologprotein 2, isoform a protein.
Length = 1187
Score = 65.7 bits (153), Expect = 3e-11
Identities = 31/81 (38%), Positives = 45/81 (55%)
Frame = +2
Query: 2 VTNTPTFQPYKIKVTEVNFKGTSNVTPIEVIGWSGEDRHTQAPGNLSLSQVTSGTSAVLS 181
+ + PTF+ Y I+V VN G S V P GWSGED +AP + + + T+ +
Sbjct: 782 IRDQPTFRKYLIQVQSVNSVGPSIVEPEIHHGWSGEDVPDEAPRDFHIDTQINFTTINFT 841
Query: 182 WTPVAPESLRGHFKGYKIQTW 244
W PV ++ GHF GY+I+ W
Sbjct: 842 WNPVDANTVNGHFVGYEIEYW 862
>AC024778-2|AAF60566.2| 2325|Caenorhabditis elegans Neuronal igcam
protein 4 protein.
Length = 2325
Score = 38.7 bits (86), Expect = 0.004
Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Frame = +2
Query: 17 TFQPYKIKVTEVNFKGTSNVTP-IEVIGWSGEDRHTQAPGNLSLSQVTSGTSAVLSWTPV 193
T++ Y+I+V N +G + IEV + E R TQAP N+ + +V + T+ + +T
Sbjct: 823 TWREYEIQVAAYNKRGLGVFSESIEVT--TSEGRPTQAPKNVRV-KVLNSTAVAIEFTAP 879
Query: 194 APESLRGHFKGYKIQTW 244
+ + G GYK+Q W
Sbjct: 880 EQQRIPGVNLGYKVQFW 896
Score = 32.7 bits (71), Expect = 0.23
Identities = 24/79 (30%), Positives = 38/79 (48%)
Frame = +2
Query: 2 VTNTPTFQPYKIKVTEVNFKGTSNVTPIEVIGWSGEDRHTQAPGNLSLSQVTSGTSAVLS 181
VT+ F Y++ V N G S T V + E + +P N+ ++ S +A++
Sbjct: 1219 VTDLRPFTSYEVNVFSENGFGRSLPTD-SVKARTYESVPSGSPRNIVVTAEGS-KAAIIK 1276
Query: 182 WTPVAPESLRGHFKGYKIQ 238
W PVA S G GYK++
Sbjct: 1277 WNPVAELSTNGDVIGYKLR 1295
Score = 31.9 bits (69), Expect = 0.41
Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
Frame = +2
Query: 2 VTNTPTFQPYKIKVTEVNFKGTSNVTPIEVI-GWSGEDRHTQAPGNLSLSQVTSGTSAVL 178
VT F Y++++ N KG P E + + P ++ S TS +
Sbjct: 1118 VTGLRPFTQYQLRLIAENVKGRG--APSEPSRSFETLQTNPDTPSQRLFAEPVSATSISV 1175
Query: 179 SWTPVAPESLRGHFKGYKI 235
SWTP+ G KGY I
Sbjct: 1176 SWTPLLATHWNGQPKGYLI 1194
>AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin form A
protein.
Length = 4280
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 571 KKEIDPKFDRAKLAGLEPNTKYRIEI 648
++ +DP + L GL PNTKY I +
Sbjct: 283 RRRVDPALNSFALTGLRPNTKYTIGV 308
>AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin form B
protein.
Length = 4450
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 571 KKEIDPKFDRAKLAGLEPNTKYRIEI 648
++ +DP + L GL PNTKY I +
Sbjct: 283 RRRVDPALNSFALTGLRPNTKYTIGV 308
>AF040648-6|AAO91708.1| 908|Caenorhabditis elegans Lethal protein
805, isoform d protein.
Length = 908
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 571 KKEIDPKFDRAKLAGLEPNTKYRIEI 648
++ +DP + L GL PNTKY I +
Sbjct: 283 RRRVDPALNSFALTGLRPNTKYTIGV 308
>AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protein
805, isoform b protein.
Length = 4450
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 571 KKEIDPKFDRAKLAGLEPNTKYRIEI 648
++ +DP + L GL PNTKY I +
Sbjct: 283 RRRVDPALNSFALTGLRPNTKYTIGV 308
>AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protein
805, isoform a protein.
Length = 4280
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 571 KKEIDPKFDRAKLAGLEPNTKYRIEI 648
++ +DP + L GL PNTKY I +
Sbjct: 283 RRRVDPALNSFALTGLRPNTKYTIGV 308
>U80438-4|AAB37634.2| 1415|Caenorhabditis elegans Uncoordinated
protein 40 protein.
Length = 1415
Score = 29.5 bits (63), Expect = 2.2
Identities = 20/75 (26%), Positives = 35/75 (46%)
Frame = +2
Query: 29 YKIKVTEVNFKGTSNVTPIEVIGWSGEDRHTQAPGNLSLSQVTSGTSAVLSWTPVAPESL 208
Y+I++ G S ++ V + D + P N+ ++ S TS +SW ES+
Sbjct: 604 YQIRIEAEGSNG-SGLSSDTVKVRTQSDEPSAPPVNIQ-AEADSSTSVRVSWDEPEEESV 661
Query: 209 RGHFKGYKIQTWTDA 253
G GY+++ T A
Sbjct: 662 NGEITGYRLKYKTKA 676
>U70618-1|AAB17088.1| 1415|Caenorhabditis elegans unc-40 protein.
Length = 1415
Score = 29.5 bits (63), Expect = 2.2
Identities = 20/75 (26%), Positives = 35/75 (46%)
Frame = +2
Query: 29 YKIKVTEVNFKGTSNVTPIEVIGWSGEDRHTQAPGNLSLSQVTSGTSAVLSWTPVAPESL 208
Y+I++ G S ++ V + D + P N+ ++ S TS +SW ES+
Sbjct: 604 YQIRIEAEGSNG-SGLSSDTVKVRTQSDEPSAPPVNIQ-AEADSSTSVRVSWDEPEEESV 661
Query: 209 RGHFKGYKIQTWTDA 253
G GY+++ T A
Sbjct: 662 NGEITGYRLKYKTKA 676
>AC024776-7|AAK68469.1| 411|Caenorhabditis elegans Nuclear pore
complex protein protein8, isoform a protein.
Length = 411
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/65 (24%), Positives = 33/65 (50%)
Frame = -3
Query: 476 LEQHGEEPIG*ASKERTVEGCPSGVTKLRVSLAGPLKLPL*ARMRTLFFLKGLNLLTRAL 297
L QHG P+ ++ V+G P V+ R+ + G L++ + + + + F + ++R
Sbjct: 38 LTQHGTTPVSGLGEKFYVKGAPEFVSTRRIPIPGELQMQM-SNIHSEFSMGFFTQISRVW 96
Query: 296 VASDS 282
V D+
Sbjct: 97 VVIDN 101
>M22751-1|AAA28106.1| 211|Caenorhabditis elegans protein (
C.elegans DNA-bindingprotein (mab5) mRNA, 3' end. ).
Length = 211
Score = 29.1 bits (62), Expect = 2.9
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +2
Query: 95 GWSGEDRHTQAPGNLSLSQ-VTSGTSAVLSWTPVAPESLRGHFKGYKIQTWT 247
GW+G+D + G + SQ +SGTSA S + A + + K Y++ T
Sbjct: 17 GWTGDDSYWAGAGTTASSQSASSGTSASAS-SSAAAAAAANNLKTYELYNHT 67
>L15201-2|AAA27945.2| 200|Caenorhabditis elegans Male abnormal
protein 5 protein.
Length = 200
Score = 29.1 bits (62), Expect = 2.9
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +2
Query: 95 GWSGEDRHTQAPGNLSLSQ-VTSGTSAVLSWTPVAPESLRGHFKGYKIQTWT 247
GW+G+D + G + SQ +SGTSA S + A + + K Y++ T
Sbjct: 6 GWTGDDSYWAGAGTTASSQSASSGTSASAS-SSAAAAAAANNLKTYELYNHT 56
>AF277990-1|AAG00458.1| 200|Caenorhabditis elegans MAB-5 protein.
Length = 200
Score = 29.1 bits (62), Expect = 2.9
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +2
Query: 95 GWSGEDRHTQAPGNLSLSQ-VTSGTSAVLSWTPVAPESLRGHFKGYKIQTWT 247
GW+G+D + G + SQ +SGTSA S + A + + K Y++ T
Sbjct: 6 GWTGDDSYWAGAGTTASSQSASSGTSASAS-SSAAAAAAANNLKTYELYNHT 56
>Z54236-7|CAA90982.1| 1471|Caenorhabditis elegans Hypothetical
protein C27B7.7 protein.
Length = 1471
Score = 27.9 bits (59), Expect = 6.6
Identities = 29/111 (26%), Positives = 42/111 (37%), Gaps = 7/111 (6%)
Frame = +1
Query: 340 VRILAYNGSFNGPASDTLSFVT----PEGQPSTVRSF--EAYPIXXXXXXXXXXXXXXRT 501
V + A N + GP S +SF+T P+ P ++ EA +
Sbjct: 622 VCVRAKNAAGIGPTSSLISFITLNGGPDSPPDNLKVLINEANQVIVYWNTPNSTTEVTGY 681
Query: 502 ASYRLQDLLQQGDRYGRGD-SEDRKKEIDPKFDRAKLAGLEPNTKYRIEIA 651
Y +DL D Y E KFD + GL+P T YR+ I+
Sbjct: 682 LIYYTRDLSLSNDDYKNWQFVEMNNNSTRYKFDLS--VGLKPKTFYRVRIS 730
>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
protein 44, isoform f protein.
Length = 6994
Score = 27.9 bits (59), Expect = 6.6
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = -2
Query: 186 VQLSTALVPDVTWDRLRLPGA*VCRSSPDQPITSMGVTFDVPLKF 52
V +S + VT R LPG S+PD P+ S+G D KF
Sbjct: 1844 VVVSKKMTRVVTTTRTTLPGEGEEPSAPDSPVESLGSVKDRIAKF 1888
>U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin
protein.
Length = 6994
Score = 27.9 bits (59), Expect = 6.6
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = -2
Query: 186 VQLSTALVPDVTWDRLRLPGA*VCRSSPDQPITSMGVTFDVPLKF 52
V +S + VT R LPG S+PD P+ S+G D KF
Sbjct: 1844 VVVSKKMTRVVTTTRTTLPGEGEEPSAPDSPVESLGSVKDRIAKF 1888
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.317 0.137 0.398
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,941,554
Number of Sequences: 27780
Number of extensions: 218384
Number of successful extensions: 788
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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