Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021010
         (652 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    29   0.039
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   3.4  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   5.9  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   5.9  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    21   7.8  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    21   7.8  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   7.8  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   7.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   7.8  

>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 29.1 bits (62), Expect = 0.039
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -2

Query: 111 SSPDQPITSMGVTFDVPLKFTSVTLIL*GWKV 16
           + PDQ I    +TFD+P +   +  I+ GW++
Sbjct: 98  AEPDQKIEINFITFDIPCEHRGLVSIIDGWEL 129


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -1

Query: 589 WDRSPSCGLRSLHGRSDHLAVVDLV 515
           WD     G+  LH  SDH+   D+V
Sbjct: 88  WDPKEYGGVEMLHVPSDHIWRPDIV 112


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 589 WDRSPSCGLRSLHGRSDHLAVVDLV 515
           W+     G++ LH  SDH+   D+V
Sbjct: 92  WEPKEYGGVKMLHVPSDHIWRPDIV 116


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 589 WDRSPSCGLRSLHGRSDHLAVVDLV 515
           W+     G++ LH  SDH+   D+V
Sbjct: 92  WEPKEYGGVKMLHVPSDHIWRPDIV 116


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +2

Query: 53  NFKGTSNVTPIEVIGWSGEDRHTQAPG 133
           N +GT  V  +  +G   E R  Q PG
Sbjct: 288 NIEGTHYVKIVYYLGIPSEARELQLPG 314


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +2

Query: 53  NFKGTSNVTPIEVIGWSGEDRHTQAPG 133
           N +GT  V  +  +G   E R  Q PG
Sbjct: 303 NIEGTHYVKIVYYLGIPSEARELQLPG 329


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +2

Query: 173 VLSWTPVAPESLRGHF 220
           VLSWTP    S+ G F
Sbjct: 284 VLSWTPYGVMSMIGAF 299


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 346  ILAYNGSFNGPASDTLSFVTPEGQPS 423
            + AYN   +GP S+ L   T E  PS
Sbjct: 1087 VQAYNQVGSGPLSEPLLTQTMEDVPS 1112


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 346  ILAYNGSFNGPASDTLSFVTPEGQPS 423
            + AYN   +GP S+ L   T E  PS
Sbjct: 1083 VQAYNQVGSGPLSEPLLTQTMEDVPS 1108


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.137    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,584
Number of Sequences: 438
Number of extensions: 2999
Number of successful extensions: 18
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)