Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021009
(830 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 139 3e-33
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 4e-04
SB_35448| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-10) 42 8e-04
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) 41 0.001
SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.008
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09) 34 0.12
SB_19388| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.16
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018) 33 0.38
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.50
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10) 31 0.87
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34) 31 1.1
SB_19176| Best HMM Match : YGGT (HMM E-Value=1.1) 30 2.0
SB_46977| Best HMM Match : Cu_amine_oxid (HMM E-Value=3.9e-09) 29 3.5
SB_36316| Best HMM Match : Cu_amine_oxid (HMM E-Value=3.5e-11) 29 3.5
SB_13861| Best HMM Match : Collagen (HMM E-Value=0.00048) 29 3.5
SB_51493| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.00067) 29 4.6
SB_50229| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_36714| Best HMM Match : RBM1CTR (HMM E-Value=0.72) 29 4.6
SB_11347| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_32768| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.1
SB_18551| Best HMM Match : RNA_pol_Rpc82 (HMM E-Value=0.69) 28 8.1
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 139 bits (336), Expect = 3e-33
Identities = 67/84 (79%), Positives = 75/84 (89%)
Frame = +1
Query: 256 FTDTRKDEQDRCITIKSTAISMFFELEEKDLVFITNPDQRE*SEKGFLINLIDSPGHVDF 435
FTDTRKDEQDRCITIKSTAIS+++EL E D +IT P ++ E+GFLINLIDSPGHVDF
Sbjct: 55 FTDTRKDEQDRCITIKSTAISLYYELPESDFEYITQP--KDPKERGFLINLIDSPGHVDF 112
Query: 436 SSEVTAALRVTDGALVVVDCMSGV 507
SSEVTAALRVTDGALVVVDC+SGV
Sbjct: 113 SSEVTAALRVTDGALVVVDCVSGV 136
Score = 126 bits (304), Expect = 2e-29
Identities = 58/84 (69%), Positives = 66/84 (78%)
Frame = +3
Query: 510 VQTETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIATYNDDG 689
VQTETVLRQAIAERIKP+LFMNKMDR YQTF RIVE++NVIIATY+D+
Sbjct: 138 VQTETVLRQAIAERIKPVLFMNKMDRALLELQLDQEDLYQTFARIVESINVIIATYSDED 197
Query: 690 GPMGEVRVDPSKGSVGFGSGLHGW 761
GPMG ++V P KG+V FGSGLHGW
Sbjct: 198 GPMGNIQVGPEKGTVAFGSGLHGW 221
Score = 99.1 bits (236), Expect = 4e-21
Identities = 47/53 (88%), Positives = 50/53 (94%)
Frame = +2
Query: 95 VNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGET 253
VNFT D+IRG+MDKK NIRNMSVIAHVDHGKSTLTDSLVSKAGIIA A+AGET
Sbjct: 1 VNFTTDQIRGIMDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAAAKAGET 53
Score = 32.7 bits (71), Expect = 0.38
Identities = 15/22 (68%), Positives = 17/22 (77%)
Frame = +2
Query: 764 FTLKQFSEMYADKFKIDLVKLM 829
FTLKQ SE+Y+ KFKI KLM
Sbjct: 223 FTLKQISEIYSAKFKIPPAKLM 244
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 42.7 bits (96), Expect = 4e-04
Identities = 17/29 (58%), Positives = 22/29 (75%)
Frame = +2
Query: 146 IRNMSVIAHVDHGKSTLTDSLVSKAGIIA 232
+RN S++AHVDHGKSTL D L+ G I+
Sbjct: 1941 VRNFSIVAHVDHGKSTLADRLLEVTGTIS 1969
Score = 33.9 bits (74), Expect = 0.16
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +1
Query: 409 IDSPGHVDFSSEVTAALRVTDGALVVVDCMSGV 507
+ + GHVDFS EV+ +L G +++VD GV
Sbjct: 1991 VKAQGHVDFSYEVSRSLAACQGVVLLVDAAQGV 2023
>SB_35448| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-10)
Length = 563
Score = 41.5 bits (93), Expect = 8e-04
Identities = 22/54 (40%), Positives = 28/54 (51%)
Frame = +3
Query: 513 QTETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIAT 674
QT VLRQA E I+P L +NK+DR + Q+I+E VN I T
Sbjct: 117 QTHVVLRQAWLENIRPCLVLNKIDRLITELKYSPSEAFIHLQQILEQVNAITGT 170
Score = 37.1 bits (82), Expect = 0.017
Identities = 19/52 (36%), Positives = 27/52 (51%)
Frame = +3
Query: 513 QTETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVII 668
QT VLRQA E I+P L +NK+DR + Q+I+E V+ +
Sbjct: 47 QTHVVLRQAWLENIRPCLVLNKIDRLITELKYSPSEAFIHLQQILEQVSTAV 98
Score = 30.3 bits (65), Expect = 2.0
Identities = 13/24 (54%), Positives = 19/24 (79%)
Frame = +1
Query: 436 SSEVTAALRVTDGALVVVDCMSGV 507
+ +V+ A+R+ DGALVVVD + GV
Sbjct: 21 AGKVSTAVRLCDGALVVVDVVEGV 44
Score = 30.3 bits (65), Expect = 2.0
Identities = 13/22 (59%), Positives = 18/22 (81%)
Frame = +1
Query: 442 EVTAALRVTDGALVVVDCMSGV 507
+V+ A+R+ DGALVVVD + GV
Sbjct: 93 QVSTAVRLCDGALVVVDVVEGV 114
>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 359
Score = 40.7 bits (91), Expect = 0.001
Identities = 22/70 (31%), Positives = 35/70 (50%)
Frame = +1
Query: 298 IKSTAISMFFELEEKDLVFITNPDQRE*SEKGFLINLIDSPGHVDFSSEVTAALRVTDGA 477
IK A S F E+E + + + + + IN++D+PGH DF+ + L D
Sbjct: 48 IKKGATSDFMEIERQRGISVAT-SVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSV 106
Query: 478 LVVVDCMSGV 507
+VV+D GV
Sbjct: 107 IVVIDVAKGV 116
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/50 (32%), Positives = 28/50 (56%)
Frame = +2
Query: 131 DKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETLSLTRVRTN 280
D+ + R +I+H D GK+TLT+ L+ G I A A ++ + + T+
Sbjct: 5 DEIKRRRTFGIISHPDAGKTTLTEKLLLFGGAIQEAGAVKSNKIKKGATS 54
>SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 809
Score = 38.3 bits (85), Expect = 0.008
Identities = 21/85 (24%), Positives = 40/85 (47%)
Frame = +2
Query: 92 MVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETLSLTRV 271
+ N+ ++ + +MD IRN+++ H+ GK+ D L + A+ G+ + L
Sbjct: 112 LTNYNIEYLADLMDNPELIRNVALAGHLHSGKTAFLDCLFEQTHPELEAKEGKEVMLNTE 171
Query: 272 RTNKTVASPLNLRPSLCSSSLKRKI 346
R K NL ++C + + R I
Sbjct: 172 RLLKHAVQE-NLAITICINKIDRLI 195
Score = 35.1 bits (77), Expect = 0.070
Identities = 17/80 (21%), Positives = 40/80 (50%)
Frame = +3
Query: 507 VVQTETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIATYNDD 686
++ TE +L+ A+ E + + +NK+DR Y + +++ VN +++ +++
Sbjct: 167 MLNTERLLKHAVQENLAITICINKIDRLILELKLPPTDAYYKLKHVIDEVNGLLSVFSEG 226
Query: 687 GGPMGEVRVDPSKGSVGFGS 746
++ + P G+V F S
Sbjct: 227 A---DDLVISPLLGNVCFAS 243
>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
Length = 123
Score = 34.3 bits (75), Expect = 0.12
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +1
Query: 388 KGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCMSG 504
K +I L+D+PGH DF + D A++VVD ++G
Sbjct: 11 KNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITG 49
>SB_19388| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 227
Score = 33.9 bits (74), Expect = 0.16
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = +3
Query: 717 PSKGSVGFGSGLHGW 761
P KG+V FGSGLHGW
Sbjct: 34 PEKGTVAFGSGLHGW 48
Score = 32.7 bits (71), Expect = 0.38
Identities = 15/22 (68%), Positives = 17/22 (77%)
Frame = +2
Query: 764 FTLKQFSEMYADKFKIDLVKLM 829
FTLKQ SE+Y+ KFKI KLM
Sbjct: 50 FTLKQISEIYSAKFKIPPAKLM 71
>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
Length = 106
Score = 32.7 bits (71), Expect = 0.38
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +2
Query: 128 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 223
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCG 32
>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 32.3 bits (70), Expect = 0.50
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +2
Query: 155 MSVIAHVDHGKSTLTDSLVSKAGIIAGARAGET 253
++++ HVDHGK+TL D+L + + AG G T
Sbjct: 31 VTIMGHVDHGKTTLLDAL-RNSSVAAGEAGGIT 62
Score = 30.3 bits (65), Expect = 2.0
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = +1
Query: 391 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCMSGV 507
G I ID+PGH F+S VTD ++VV GV
Sbjct: 75 GEKITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDGV 113
>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
Length = 783
Score = 31.5 bits (68), Expect = 0.87
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +1
Query: 406 LIDSPGHVDFSSEVTAALRVTDGALVVVDCMSGV 507
+ID+PGH FS+ + + D A++VVD M G+
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVVDIMHGL 715
>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
Length = 240
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +2
Query: 155 MSVIAHVDHGKSTLTDSLVSKAGIIAGARAGET 253
++V+ HVDHGK++L D + A +I G G T
Sbjct: 94 VTVMGHVDHGKTSLLD-YIRNANVIEGESGGIT 125
>SB_19176| Best HMM Match : YGGT (HMM E-Value=1.1)
Length = 409
Score = 30.3 bits (65), Expect = 2.0
Identities = 36/108 (33%), Positives = 50/108 (46%), Gaps = 9/108 (8%)
Frame = -3
Query: 381 LFTLVRVCDEY*IFLFKLEEHR----DGRRFNGDATVLFVLTRV---SERVSPALAPAMI 223
LF ++ C E I L+ L R G + G TVL V+ + S SP A +
Sbjct: 274 LFFVIYYCAEQSIKLWALGWQRYVSFKGNLYCGGVTVLLVVIEIIHLSLFGSPFNYAAKM 333
Query: 222 PALETNESVRVDLP*STWAITDMLRIFRFLSIIPRIS--STVKFTILD 85
P T+ LP + I +ML IFR L ++P IS S V T+L+
Sbjct: 334 PTT-TDADYIFSLP-NMVRIINMLIIFRLLRVVPNISALSLVAETLLN 379
>SB_46977| Best HMM Match : Cu_amine_oxid (HMM E-Value=3.9e-09)
Length = 549
Score = 29.5 bits (63), Expect = 3.5
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -2
Query: 829 HKLDKVNLEFVSIHLGELFEGETHP*RPDPKPTEPLLGSTRTSPMG 692
+K D +N F + +GE + ++ R PKP PL G + P G
Sbjct: 262 YKSDSLNKSFFAAPIGESKDFASYKRRGKPKPQVPLRGPEQYQPDG 307
>SB_36316| Best HMM Match : Cu_amine_oxid (HMM E-Value=3.5e-11)
Length = 632
Score = 29.5 bits (63), Expect = 3.5
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -2
Query: 829 HKLDKVNLEFVSIHLGELFEGETHP*RPDPKPTEPLLGSTRTSPMG 692
+K D +N F + +GE + ++ R PKP PL G + P G
Sbjct: 388 YKSDSLNKSFFAAPIGESKDFASYKRRGKPKPQVPLRGPEQYQPDG 433
>SB_13861| Best HMM Match : Collagen (HMM E-Value=0.00048)
Length = 763
Score = 29.5 bits (63), Expect = 3.5
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -1
Query: 530 QYCFGLYNTPDIQSTTTRAPSVTRSAAVTSEEKSTC 423
Q C L +P +QS + V A V+ ++KSTC
Sbjct: 345 QQCHPLIQSPALQSALIKLVDVKEEAEVSKKKKSTC 380
>SB_51493| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.00067)
Length = 1873
Score = 29.1 bits (62), Expect = 4.6
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 772 EGETHP*RPDPKPTEPLLGSTRTSPMGPPSS 680
EG H P+ P PL+ TR P GP S+
Sbjct: 1567 EGVVHSTAPEKFPVRPLIIKTREVPQGPRST 1597
>SB_50229| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1719
Score = 29.1 bits (62), Expect = 4.6
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 772 EGETHP*RPDPKPTEPLLGSTRTSPMGPPSS 680
EG H P+ P PL+ TR P GP S+
Sbjct: 1353 EGVVHSTAPEKFPVRPLIIKTREVPQGPRST 1383
>SB_36714| Best HMM Match : RBM1CTR (HMM E-Value=0.72)
Length = 300
Score = 29.1 bits (62), Expect = 4.6
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -1
Query: 473 PSVTRSAAVTSEEKSTCPGESIKLIKKPFSLYSRWSGFVMN 351
P R A TCPGE ++L+ + +RWS V+N
Sbjct: 242 PPPERQALACLRHTHTCPGEQLRLVGQ-LGHRARWSSSVIN 281
>SB_11347| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1234
Score = 29.1 bits (62), Expect = 4.6
Identities = 18/63 (28%), Positives = 29/63 (46%)
Frame = -1
Query: 614 SFKLELKKSTVHFVHEQNRLDALGNSLTQYCFGLYNTPDIQSTTTRAPSVTRSAAVTSEE 435
S K K + +Q + D L SL CF + + + T R+PS + + + S+E
Sbjct: 52 STKKTCKGGSPEMKSKQKKSDPLQRSLD--CFKVNRQSTLDAFTARSPSTSATVSTQSKE 109
Query: 434 KST 426
K T
Sbjct: 110 KET 112
>SB_32768| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1393
Score = 28.7 bits (61), Expect = 6.1
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -2
Query: 751 RPDPKPTEPLLGSTRTSPMGPPSS 680
+P PK T P+ G+ + PMGPP S
Sbjct: 641 KPRPKSTPPM-GAVQVLPMGPPPS 663
>SB_18551| Best HMM Match : RNA_pol_Rpc82 (HMM E-Value=0.69)
Length = 348
Score = 28.3 bits (60), Expect = 8.1
Identities = 18/89 (20%), Positives = 42/89 (47%)
Frame = +2
Query: 119 RGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETLSLTRVRTNKTVASP 298
R ++DK+ I +M V +HG D++ ++ A + L + ++ A+
Sbjct: 204 RRLLDKQERIDSMIVNLKAEHGGEAAADAISDLQELVTPAEREMLMKLKITQARQSGANN 263
Query: 299 LNLRPSLCSSSLKRKI*YSSQTLTSVNRV 385
N+ ++ L++KI +S+ T + ++
Sbjct: 264 TNIELIGKTNLLQKKIKIASEVGTILKQL 292
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,087,092
Number of Sequences: 59808
Number of extensions: 581363
Number of successful extensions: 1917
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1915
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2335516755
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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