Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021009
         (830 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcript...    29   0.17 
AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.            26   1.6  
DQ004399-1|AAY21238.1|  847|Anopheles gambiae lysozyme c-6 protein.    25   3.7  
CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transpos...    23   8.6  

>AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1201

 Score = 29.1 bits (62), Expect = 0.17
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = +1

Query: 127 DGQEAEYPQHVCDRPRRSRQVNPHGLVGFQGRYHCWCESRR 249
           D   A   QH+  RP+RS + NP       GR H  C+SRR
Sbjct: 273 DENPAGAQQHLSHRPQRSTRKNP------AGRQHDRCDSRR 307


>AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.
          Length = 3361

 Score = 25.8 bits (54), Expect = 1.6
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -1

Query: 413 SIKLIKKPFSLYSRWSGFVMNTKSFSSSSKNIEMAVDL 300
           +++L+KKP SL S W       +       N ++A+ L
Sbjct: 156 TVRLLKKPPSLDSEWKSSTSTIQLIEQLDSNKQLAIAL 193


>DQ004399-1|AAY21238.1|  847|Anopheles gambiae lysozyme c-6 protein.
          Length = 847

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = -2

Query: 775 FEGETHP*RPDPKPTEPLLGSTRTSPMGPPSSL 677
           FEGETHP     KP   ++  T T P  P  SL
Sbjct: 307 FEGETHP-TTQNKPRPGIVAPT-TIPTVPKKSL 337


>CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transposon
           polyprotein protein.
          Length = 1726

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 142 EYPQHVCDRPRRSRQVNPHGLVGFQG 219
           ++P HVC+R  R+  +N   +V   G
Sbjct: 350 QHPLHVCERFERASVINREEIVRKHG 375


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 899,276
Number of Sequences: 2352
Number of extensions: 18916
Number of successful extensions: 36
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 87651612
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)