Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021009
(830 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alp... 33 0.004
AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1al... 33 0.004
AF069739-1|AAC63272.2| 690|Apis mellifera translation initiatio... 29 0.040
EF013389-1|ABK54743.1| 172|Apis mellifera elongation factor 1-a... 28 0.092
AY208278-1|AAO48970.1| 274|Apis mellifera elongation factor 1-a... 28 0.092
AM050259-1|CAJ18340.1| 683|Apis mellifera putative H3K9 methylt... 25 0.65
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 23 4.6
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 23 4.6
AB086196-1|BAD06465.1| 289|Apis mellifera Period protein. 23 4.6
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 22 6.0
>X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alpha
protein.
Length = 461
Score = 32.7 bits (71), Expect = 0.004
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +2
Query: 128 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 223
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCG 32
Score = 27.5 bits (58), Expect = 0.16
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +1
Query: 394 FLINLIDSPGHVDFSSEVTAALRVTDGALVVV 489
+ + +ID+PGH DF + D A+++V
Sbjct: 85 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 116
>AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1alpha
F2 protein.
Length = 461
Score = 32.7 bits (71), Expect = 0.004
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +2
Query: 128 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 223
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCG 32
Score = 28.3 bits (60), Expect = 0.092
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +1
Query: 394 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCMSG 504
+ + +ID+PGH DF + D A+++V +G
Sbjct: 85 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 121
>AF069739-1|AAC63272.2| 690|Apis mellifera translation initiation
factor 2 protein.
Length = 690
Score = 29.5 bits (63), Expect = 0.040
Identities = 10/18 (55%), Positives = 16/18 (88%)
Frame = +2
Query: 155 MSVIAHVDHGKSTLTDSL 208
++++ HVDHGK+TL D+L
Sbjct: 148 VTIMGHVDHGKTTLLDAL 165
Score = 28.7 bits (61), Expect = 0.070
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +1
Query: 385 EKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCMSGV 507
E G + +D+PGH F S +TD ++VV GV
Sbjct: 190 ESGERVTFLDTPGHAAFISMRHRGAHITDIVVLVVAADDGV 230
>EF013389-1|ABK54743.1| 172|Apis mellifera elongation factor
1-alpha protein.
Length = 172
Score = 28.3 bits (60), Expect = 0.092
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +1
Query: 394 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCMSG 504
+ + +ID+PGH DF + D A+++V +G
Sbjct: 12 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 48
>AY208278-1|AAO48970.1| 274|Apis mellifera elongation factor
1-alpha protein.
Length = 274
Score = 28.3 bits (60), Expect = 0.092
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +1
Query: 394 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCMSG 504
+ + +ID+PGH DF + D A+++V +G
Sbjct: 28 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 64
>AM050259-1|CAJ18340.1| 683|Apis mellifera putative H3K9
methyltransferase protein.
Length = 683
Score = 25.4 bits (53), Expect = 0.65
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +2
Query: 152 NMSVIAHVDHGKSTLTDSL 208
N+ I HV HGKST+ ++
Sbjct: 44 NIGTIGHVAHGKSTIVKAI 62
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 22.6 bits (46), Expect = 4.6
Identities = 8/21 (38%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Frame = +3
Query: 18 PFSKRTPLLAYGSW-FNRTKI 77
PF ++T ++ +GSW FN ++
Sbjct: 159 PFDQQTCIMKFGSWTFNGDQV 179
Score = 22.2 bits (45), Expect = 6.0
Identities = 6/14 (42%), Positives = 10/14 (71%)
Frame = -2
Query: 133 VHHPTDLVYREIHH 92
+HHP + R++HH
Sbjct: 400 LHHPNCKINRKVHH 413
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 22.6 bits (46), Expect = 4.6
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -2
Query: 289 NGLVRPYACQ*KGLSGSRTSNDTGL 215
NG+V P + KG++G R S GL
Sbjct: 216 NGIVSPQEERPKGINGRRASLFCGL 240
>AB086196-1|BAD06465.1| 289|Apis mellifera Period protein.
Length = 289
Score = 22.6 bits (46), Expect = 4.6
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -2
Query: 289 NGLVRPYACQ*KGLSGSRTSNDTGL 215
NG+V P + KG++G R S GL
Sbjct: 211 NGIVSPQEERPKGINGRRASLFCGL 235
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 22.2 bits (45), Expect = 6.0
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = +3
Query: 18 PFSKRTPLLAYGSW 59
PF ++T +L +GSW
Sbjct: 161 PFDEQTCVLKFGSW 174
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,340
Number of Sequences: 438
Number of extensions: 5365
Number of successful extensions: 26
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26581563
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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