Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021008
         (778 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g44280.1 68418.m05420 zinc finger (C3HC4-type RING finger) fa...    28   6.0  
At5g57190.1 68418.m07144 phosphatidylserine decarboxylase, putat...    28   7.9  

>At5g44280.1 68418.m05420 zinc finger (C3HC4-type RING finger)
           family protein contains similarity to polycomb-M33
           interacting protein Ring1B [Mus musculus] GI:2239142;
           contains Pfam profile PF00097: Zinc finger, C3HC4 type
           (RING finger)
          Length = 486

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -2

Query: 558 MSIKSNSLSSLDIPEKVQCSRTRFT*E 478
           MS+K+NS SS +IP+     R RF  E
Sbjct: 1   MSVKNNSFSSAEIPDVADQPRDRFNPE 27


>At5g57190.1 68418.m07144 phosphatidylserine decarboxylase, putative
           similar to SP|P53037 Phosphatidylserine decarboxylase
           proenzyme 2 precursor (EC 4.1.1.65) {Saccharomyces
           cerevisiae}; contains Pfam profile PF02666:
           phosphatidylserine decarboxylase
          Length = 615

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = -3

Query: 131 NSVVDGNIVIFFLLPL*ADEHTAHLMVSG 45
           N+ +DG++VIF L P   D H  H+ VSG
Sbjct: 458 NAFLDGSLVIFRLAP--QDYHRFHVPVSG 484


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,337,860
Number of Sequences: 28952
Number of extensions: 291670
Number of successful extensions: 497
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1736283200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)