Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021006
         (801 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    23   2.1  
AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory recept...    23   2.1  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   8.7  

>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 16/59 (27%), Positives = 29/59 (49%)
 Frame = +3

Query: 537 NYHYYWEIKMLTDTYGTDILIGVGSNKVNISDPQFTFTSLIGQDEESYGLSYTGAVRHN 713
           ++H    +K+  +T+G  +L+  G + V I    F FT+ + Q  E Y +S    +  N
Sbjct: 509 HHHLSKLVKLFNETFGIVLLLMFGVSFVVIVITIFFFTANV-QAGELYFMSLLNPILSN 566


>AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory receptor
           candidate 24 protein.
          Length = 384

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 16/59 (27%), Positives = 29/59 (49%)
 Frame = +3

Query: 537 NYHYYWEIKMLTDTYGTDILIGVGSNKVNISDPQFTFTSLIGQDEESYGLSYTGAVRHN 713
           ++H    +K+  +T+G  +L+  G + V I    F FT+ + Q  E Y +S    +  N
Sbjct: 234 HHHLSKLVKLFNETFGIVLLLMFGVSFVVIVITIFFFTANV-QAGELYFMSLLNPILSN 291


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 10/39 (25%), Positives = 18/39 (46%)
 Frame = +1

Query: 325 CWSKRSGPVPWKNLNLCTCGEEQNLKEWSWERPPYVGSS 441
           C  +   P  W+  +  TC +   +K+ S  RP   G++
Sbjct: 876 CKCENGKPTCWRECDKATCEKLFRMKKSSALRPASGGTT 914


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,837
Number of Sequences: 336
Number of extensions: 4046
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21791490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)