Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021006
         (801 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.02c |rpn502|rpn5, rpn5-b|19S proteasome regulatory subu...    27   4.1  
SPAC1420.03 |rpn501|rpn5-a, rpn5|19S proteasome regulatory subun...    27   4.1  
SPAC57A7.10c |sec21||coatomer gamma subunit Sec21 |Schizosacchar...    26   7.2  
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos...    26   7.2  

>SPAPB8E5.02c |rpn502|rpn5, rpn5-b|19S proteasome regulatory subunit
           Rpn502|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 443

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -1

Query: 273 RFHCRILSATLDMSPKRTTQ 214
           R HC  L   LDMSP  T Q
Sbjct: 354 RIHCSRLGVLLDMSPSETEQ 373


>SPAC1420.03 |rpn501|rpn5-a, rpn5|19S proteasome regulatory subunit
           Rpn501|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 443

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -1

Query: 273 RFHCRILSATLDMSPKRTTQ 214
           R HC  L   LDMSP  T Q
Sbjct: 354 RIHCSRLGVLLDMSPSETEQ 373


>SPAC57A7.10c |sec21||coatomer gamma subunit Sec21
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 16/62 (25%), Positives = 25/62 (40%)
 Frame = -2

Query: 587 STICIS*HFNFPIIMVVMNHWAVSPDPAVPEL*NG*KVTCLRSFVRTSQLEPTYGGLSQL 408
           S   +S +  +P+   +++ W      AV     G KV     F  T    P   G+SQ 
Sbjct: 154 SAALVSAYHLYPVAKDIVSRWNNEVQDAVTSHNVGRKVASSPFFTSTLGYTPNASGISQY 213

Query: 407 HS 402
           H+
Sbjct: 214 HA 215


>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 701

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -1

Query: 336 FGPAWAIRPSLIFTIDLLAIIRF 268
           FGP++A+  SLI  ID L ++ F
Sbjct: 565 FGPSFALYNSLIMLIDKLEVLGF 587


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,231,775
Number of Sequences: 5004
Number of extensions: 65096
Number of successful extensions: 184
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)