Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021006
         (801 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29554| Best HMM Match : No HMM Matches (HMM E-Value=.)              61   9e-10
SB_43259| Best HMM Match : SOCS_box (HMM E-Value=0.00086)              42   8e-04
SB_17015| Best HMM Match : 7tm_1 (HMM E-Value=0.00027)                 28   7.7  

>SB_29554| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 285

 Score = 61.3 bits (142), Expect = 9e-10
 Identities = 29/71 (40%), Positives = 42/71 (59%)
 Frame = +3

Query: 498 GYCRVRGNCPMIHNYHYYWEIKMLTDTYGTDILIGVGSNKVNISDPQFTFTSLIGQDEES 677
           G   V GN    H  HY WEIK LTD  GT ++IGV +    +    + + +L+G+D+ES
Sbjct: 108 GTAAVLGNKAFAHGQHY-WEIK-LTDVRGTSMMIGVATQDAMLHTDNYEYVNLVGRDQES 165

Query: 678 YGLSYTGAVRH 710
           +GLS+ G + H
Sbjct: 166 WGLSHRGEIWH 176


>SB_43259| Best HMM Match : SOCS_box (HMM E-Value=0.00086)
          Length = 174

 Score = 41.5 bits (93), Expect = 8e-04
 Identities = 15/44 (34%), Positives = 30/44 (68%)
 Frame = +3

Query: 594 LIGVGSNKVNISDPQFTFTSLIGQDEESYGLSYTGAVRHNS*SH 725
           ++GVG+   ++   + +F S++G+D++S+GLSY G   H+  +H
Sbjct: 1   MVGVGTKDTDLERYRSSFCSILGRDQDSWGLSYFGTFHHDGLTH 44


>SB_17015| Best HMM Match : 7tm_1 (HMM E-Value=0.00027)
          Length = 251

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 181 FNCWCCYKIWVLSCAF 228
           F CWC   IWV++C F
Sbjct: 153 FLCWCPSWIWVITCLF 168


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,427,569
Number of Sequences: 59808
Number of extensions: 492482
Number of successful extensions: 1068
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1068
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2215746665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)