Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021006
         (801 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084156-1|AAK68491.2|  466|Caenorhabditis elegans Hypothetical ...    33   0.24 
AC084156-2|AAK68490.2|  243|Caenorhabditis elegans Hypothetical ...    32   0.42 
AF163019-1|AAD49324.1| 1312|Caenorhabditis elegans trithorax-rel...    28   6.8  
AF039718-1|AAB96746.1| 1312|Caenorhabditis elegans Abnormal cell...    28   6.8  
Z68751-3|CAA92973.1|  760|Caenorhabditis elegans Hypothetical pr...    28   8.9  

>AC084156-1|AAK68491.2|  466|Caenorhabditis elegans Hypothetical
           protein Y46E12BL.4 protein.
          Length = 466

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 20/72 (27%), Positives = 32/72 (44%)
 Frame = +3

Query: 510 VRGNCPMIHNYHYYWEIKMLTDTYGTDILIGVGSNKVNISDPQFTFTSLIGQDEESYGLS 689
           +RG       +H  W+I+      GT  ++GV +    +    +T  +LIG  +ESYG  
Sbjct: 147 IRGKMGYSRGFHV-WQIEWPERQRGTHAVVGVATKNAPLHAAGYT--ALIGTTDESYGWD 203

Query: 690 YTGAVRHNS*SH 725
            T    H+   H
Sbjct: 204 ITRRECHHDSKH 215


>AC084156-2|AAK68490.2|  243|Caenorhabditis elegans Hypothetical
           protein Y46E12BL.3 protein.
          Length = 243

 Score = 32.3 bits (70), Expect = 0.42
 Identities = 16/58 (27%), Positives = 29/58 (50%)
 Frame = +3

Query: 510 VRGNCPMIHNYHYYWEIKMLTDTYGTDILIGVGSNKVNISDPQFTFTSLIGQDEESYG 683
           +RG       +H  W+I+      GT  ++GV +    +   ++T  +L+G + ESYG
Sbjct: 58  IRGKMGYSRGFHV-WQIEWPERQRGTHAVVGVATKNAPLQAAEYT--TLVGSNNESYG 112


>AF163019-1|AAD49324.1| 1312|Caenorhabditis elegans trithorax-related
            protein LIN-59 protein.
          Length = 1312

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
 Frame = +1

Query: 217  SCAFWRHI*CCREYATMESNNRKQVNSKYQARPY-CP-CWSKRSGPVPWKNLNL 372
            +C FW H+ CC+         +K  N       Y C  C +K++G  P  ++ L
Sbjct: 986  TCHFWLHVDCCQYVVRSNEKAQKSKNPPSDDGEYICDFCTNKQNGLRPSADVKL 1039


>AF039718-1|AAB96746.1| 1312|Caenorhabditis elegans Abnormal cell
            lineage protein 59 protein.
          Length = 1312

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
 Frame = +1

Query: 217  SCAFWRHI*CCREYATMESNNRKQVNSKYQARPY-CP-CWSKRSGPVPWKNLNL 372
            +C FW H+ CC+         +K  N       Y C  C +K++G  P  ++ L
Sbjct: 986  TCHFWLHVDCCQYVVRSNEKAQKSKNPPSDDGEYICDFCTNKQNGLRPSADVKL 1039


>Z68751-3|CAA92973.1|  760|Caenorhabditis elegans Hypothetical
           protein T05E11.3 protein.
          Length = 760

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +1

Query: 406 WSWERPPYVGSSWLVLTNDLKQVTFHPFYSSGTAGSGE 519
           W WE+   V   W+   N +++  +  FY S T  S E
Sbjct: 310 WDWEKVNNVKPIWMRKPNQVEEDEYKQFYKSITKDSEE 347


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,885,346
Number of Sequences: 27780
Number of extensions: 370468
Number of successful extensions: 885
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 885
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)