Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021006
         (801 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    23   3.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   4.4  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   5.8  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   7.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   7.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   7.6  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 451 GRASWNRRTEASPNSILL 398
           G A W+  TE +PN+ +L
Sbjct: 320 GIACWDTNTELNPNTFIL 337


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = +3

Query: 600  GVGSNKVNISDPQFTFTSLIGQDEESYGLSY 692
            G GS   N+  P++   +    +E+ YG  Y
Sbjct: 1794 GGGSGTHNVFSPEYDDPANCAPEEDQYGSQY 1824


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 9/32 (28%), Positives = 14/32 (43%)
 Frame = +1

Query: 403 EWSWERPPYVGSSWLVLTNDLKQVTFHPFYSS 498
           +W W  PP  GS+  V   ++      P Y +
Sbjct: 386 DWLWIVPPISGSATPVFHQEMALYYLKPSYDA 417


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = +2

Query: 233 DISNVAESMRQWNLIIASKSIVNIKLGRI 319
           ++SN+  +M   N   A ++I +IK+G++
Sbjct: 705 ELSNMYRTMEANNYDTAEEAIRDIKIGKL 733


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -1

Query: 312  PSLIFTIDLLAIIRFHCRILSATLDMSPKRTTQN 211
            P L FTI    I  FH  ++S ++ M  +    N
Sbjct: 1528 PILYFTIQYRPINEFHWTLVSNSVKMQRRFVVTN 1561


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -1

Query: 312  PSLIFTIDLLAIIRFHCRILSATLDMSPKRTTQN 211
            P L FTI    I  FH  ++S ++ M  +    N
Sbjct: 1524 PILYFTIQYRPINEFHWTLVSNSVKMQRRFVVTN 1557


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,397
Number of Sequences: 438
Number of extensions: 4694
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)