Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021006
         (801 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g54930.1 68416.m06087 serine/threonine protein phosphatase 2A...    31   0.89 
At5g59220.1 68418.m07422 protein phosphatase 2C, putative / PP2C...    30   2.1  
At2g18245.1 68415.m02127 expressed protein                             29   3.6  
At5g58910.1 68418.m07380 laccase, putative / diphenol oxidase, p...    28   6.3  
At3g63100.1 68416.m07087 glycine-rich protein                          28   8.3  
At1g53400.1 68414.m06053 expressed protein                             28   8.3  

>At3g54930.1 68416.m06087 serine/threonine protein phosphatase 2A
           (PP2A) regulatory subunit B', putative similar to
           SWISS-PROT:Q28653 serine/threonine protein phosphatase
           2A, 56 kDa regulatory subunit, delta isoform (PP2A, B
           subunit, B' delta isoform, PP2A, B subunit, B56 delta
           isoform, PP2A, B subunit, PR61 delta isoform, PP2A, B
           subunit, R5 delta isoform, PP2A, B subunit, B'-gamma)
           [Oryctolagus cuniculus]; contains Pfam domain, PF01603:
           Protein phosphatase 2A regulatory B subunit (B56 family)
          Length = 497

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -1

Query: 252 SATLDMSPKRTTQNPNFVTTPTIKSMELLKRITA 151
           S T   SP +T  +P F TTP ++ + LLK +++
Sbjct: 54  SQTTAQSPSQTPNHPMFTTTPILEVLPLLKDVSS 87


>At5g59220.1 68418.m07422 protein phosphatase 2C, putative / PP2C,
           putative ABA induced protein phosphatase 2C, Fagus
           sylvatica, EMBL:FSY277743
          Length = 413

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +2

Query: 650 VSNRTGRGIVRTLLHGRRASQLLKSPETRSASVG-GTIMESG 772
           VSN T   +VR  L G+   Q+  SPE     VG G ++  G
Sbjct: 333 VSNETACSVVRMCLRGKVNGQVSSSPEREMTGVGAGNVVVGG 374


>At2g18245.1 68415.m02127 expressed protein
          Length = 398

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -2

Query: 413 QLHSFKFCSSPHVQRFRFF 357
           ++HSF F SSPHV  +R F
Sbjct: 356 KIHSFNFKSSPHVDHYRNF 374


>At5g58910.1 68418.m07380 laccase, putative / diphenol oxidase,
           putative similar to diphenol oxidase [Nicotiana
           tabacum][GI:1685087]
          Length = 523

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
 Frame = -1

Query: 519 FPGPCSTRTI---EWMKSDLLEVIREDEPAGT 433
           FP P   +TI   EW KSD+ E+I E    GT
Sbjct: 112 FPKPYKEKTIVLSEWWKSDVEELINEASRIGT 143


>At3g63100.1 68416.m07087 glycine-rich protein 
          Length = 199

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = +2

Query: 596 HRRRLEQSEHKRSSVHVHVSNRTGRGIVRTLLHGR-RASQLLKSPETRSASVGG 754
           HR   ++  H+    H H  +R GRG  R   HGR R   + ++ E     VGG
Sbjct: 113 HRHGRDRGHHRGHGHHHHRGHRRGRG--RGHGHGRGRGGHVQEAGERWEQEVGG 164


>At1g53400.1 68414.m06053 expressed protein
          Length = 114

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +1

Query: 346 PVPWKNLNLCTCGEEQNLKEWSWERPPYVG 435
           P PWK+    T  E   L+E  W+  P+ G
Sbjct: 21  PKPWKHTQPITKAELMKLREEFWDTAPHYG 50


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,991,904
Number of Sequences: 28952
Number of extensions: 353098
Number of successful extensions: 910
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1814318400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)