Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021005
         (734 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p...    27   2.8  
SPAC15A10.06 |||CPA1 sodium ion/proton antiporter|Schizosaccharo...    27   3.7  
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz...    26   6.4  

>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 417

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 145 QGRLSCENFKIYRRVIAQDNLSPNG 71
           +G L C+  K+YR   A DNL  NG
Sbjct: 233 RGGLLCKGGKLYRTNTAYDNLCENG 257


>SPAC15A10.06 |||CPA1 sodium ion/proton
           antiporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
 Frame = +3

Query: 453 QNVTNFHPKIFFSVL---*ILTSGYE 521
           QN+ +FH   FF+VL    IL SGYE
Sbjct: 88  QNMVSFHSTYFFNVLLPPIILNSGYE 113


>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 18/62 (29%), Positives = 30/62 (48%)
 Frame = -3

Query: 606 FNYFYFLWSTFSMRENKVF*SYLPSEKFFHIHL*VFKVQKRISSGENS*HSAIFSYNSLT 427
           F Y   +WS F  ++     S L   K+F   L +  +   ISSG    H++  ++++LT
Sbjct: 452 FWYLNNIWSVFEYKDPSTKLSAL-IPKYFFSELNIASICYEISSGLAFLHNSGIAHHNLT 510

Query: 426 LE 421
            E
Sbjct: 511 TE 512


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,883,143
Number of Sequences: 5004
Number of extensions: 58297
Number of successful extensions: 151
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)