Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021005
         (734 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0247 + 16030543-16031324,16032812-16033088,16033374-160335...    28   6.7  

>09_04_0247 +
           16030543-16031324,16032812-16033088,16033374-16033559,
           16033714-16033866,16034277-16034702,16035922-16037668,
           16037687-16038183,16038519-16038709,16038786-16038941,
           16040077-16040311,16040416-16040723,16041279-16041439,
           16041852-16041895,16041975-16042067
          Length = 1751

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 20/69 (28%), Positives = 30/69 (43%)
 Frame = +3

Query: 240 TLSLFKRKRLNTRRHRYHPHQ*KILNHSLLESIIATVRRSHNWSSTVSKLTEVHWASSLV 419
           T  L  R+R   R HR+ P     L  S L  ++A++  S       +       ASS  
Sbjct: 21  TFPLILRRRQRRRHHRHRPRPCPTLRAS-LSDLLASIPSSLALVGPAAAAAVAAVASSFS 79

Query: 420 SLTSKNYMR 446
           S +S +Y+R
Sbjct: 80  SSSSSSYVR 88


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,499,785
Number of Sequences: 37544
Number of extensions: 340201
Number of successful extensions: 678
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)