Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021005
         (734 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68298-3|CAA92600.2|  357|Caenorhabditis elegans Hypothetical pr...    69   3e-12
U21324-13|AAA62558.1|  357|Caenorhabditis elegans Hypothetical p...    66   2e-11
Z50873-2|CAA90759.2|  620|Caenorhabditis elegans Hypothetical pr...    34   0.12 
Z50873-1|CAA90760.2|  961|Caenorhabditis elegans Hypothetical pr...    34   0.12 
X92565-1|CAA63315.1|  620|Caenorhabditis elegans LIN-2B protein.       34   0.12 
X92564-1|CAA63314.1|  961|Caenorhabditis elegans LIN-2A protein.       34   0.12 
U53147-4|AAA96115.1|  668|Caenorhabditis elegans Temporarily ass...    28   6.0  
Z82279-2|CAB05260.2|  256|Caenorhabditis elegans Hypothetical pr...    28   7.9  
Z66511-1|CAA91314.1|  537|Caenorhabditis elegans Hypothetical pr...    28   7.9  
AY151209-1|AAN72826.1|  256|Caenorhabditis elegans COG-1A protein.     28   7.9  

>Z68298-3|CAA92600.2|  357|Caenorhabditis elegans Hypothetical
           protein F44D12.4 protein.
          Length = 357

 Score = 68.9 bits (161), Expect = 3e-12
 Identities = 34/82 (41%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
 Frame = +1

Query: 487 FLYFKYSQVDMKKLLGGQIGLEDFIFAHRKGRPKEIEIVKTEDALGLTITDNGAGYAFIK 666
           FL     + DMK +  G +  +D +FAH +G+  E+ +VK  +  G+T+TDNG G AFIK
Sbjct: 104 FLTVNDFKPDMKNMFSGTLNFKDMLFAHVRGQATELRMVKDANVFGVTVTDNGLGNAFIK 163

Query: 667 RIKEGSIVXRI-PHIEVGDHIE 729
            I  GS+  R+ P  +VG  IE
Sbjct: 164 VISPGSVFDRMRPATQVGQLIE 185



 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 25/59 (42%), Positives = 39/59 (66%)
 Frame = +2

Query: 362 QLVFHCQQAHGSPLGLISGFSNVKELYEKIAECYEFSPEDILFCTLNTHKWI*KNFSEG 538
           +L F CQ AHGSP+ +I  +++++ELY+ IA+ +  S +DI+F T+N  K   KN   G
Sbjct: 62  ELKFPCQLAHGSPVAIIDKWNDMEELYQSIADFFAISKDDIIFLTVNDFKPDMKNMFSG 120


>U21324-13|AAA62558.1|  357|Caenorhabditis elegans Hypothetical
           protein C35D10.2 protein.
          Length = 357

 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 29/59 (49%), Positives = 41/59 (69%)
 Frame = +2

Query: 362 QLVFHCQQAHGSPLGLISGFSNVKELYEKIAECYEFSPEDILFCTLNTHKWI*KNFSEG 538
           QL F CQ AHGSP+G+I  ++N++ELY+ IA+C+  S +DI+F T+N  K   KN   G
Sbjct: 62  QLKFACQMAHGSPVGIIDKWNNMEELYQSIADCFTISKDDIIFLTVNDFKPDMKNMFTG 120



 Score = 64.9 bits (151), Expect = 6e-11
 Identities = 34/82 (41%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
 Frame = +1

Query: 487 FLYFKYSQVDMKKLLGGQIGLEDFIFAHRKGRPKEIEIVKTEDALGLTITDNGAGYAFIK 666
           FL     + DMK +  G +  +D +FAH +G+  E+ +VK     G+TITDNG G AFIK
Sbjct: 104 FLTVNDFKPDMKNMFTGTLNFKDMLFAHIRGQATELRVVKDAKNFGVTITDNGLGNAFIK 163

Query: 667 RIKEGSIVXRI-PHIEVGDHIE 729
            I   S+  R+ P  +VG  IE
Sbjct: 164 VISPDSVFDRMRPATQVGQLIE 185


>Z50873-2|CAA90759.2|  620|Caenorhabditis elegans Hypothetical
           protein F17E5.1b protein.
          Length = 620

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +1

Query: 607 TEDALGLTITDNGAGYAFIKRIKEGSIVXRIPHIEVGDHIEK 732
           T++ +G+T+  N  G  F+ RI  G ++ R   + VGD I +
Sbjct: 212 TQEPMGITLKVNEDGRCFVARIMHGGMIHRQATLHVGDEIRE 253


>Z50873-1|CAA90760.2|  961|Caenorhabditis elegans Hypothetical
           protein F17E5.1a protein.
          Length = 961

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +1

Query: 607 TEDALGLTITDNGAGYAFIKRIKEGSIVXRIPHIEVGDHIEK 732
           T++ +G+T+  N  G  F+ RI  G ++ R   + VGD I +
Sbjct: 553 TQEPMGITLKVNEDGRCFVARIMHGGMIHRQATLHVGDEIRE 594


>X92565-1|CAA63315.1|  620|Caenorhabditis elegans LIN-2B protein.
          Length = 620

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +1

Query: 607 TEDALGLTITDNGAGYAFIKRIKEGSIVXRIPHIEVGDHIEK 732
           T++ +G+T+  N  G  F+ RI  G ++ R   + VGD I +
Sbjct: 212 TQEPMGITLKVNEDGRCFVARIMHGGMIHRQATLHVGDEIRE 253


>X92564-1|CAA63314.1|  961|Caenorhabditis elegans LIN-2A protein.
          Length = 961

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +1

Query: 607 TEDALGLTITDNGAGYAFIKRIKEGSIVXRIPHIEVGDHIEK 732
           T++ +G+T+  N  G  F+ RI  G ++ R   + VGD I +
Sbjct: 553 TQEPMGITLKVNEDGRCFVARIMHGGMIHRQATLHVGDEIRE 594


>U53147-4|AAA96115.1|  668|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 117 protein.
          Length = 668

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +1

Query: 586 KEIEIVKTEDA-LGLTITDNGAGYAFIKRIKEGSIVXRIPHIEVGDHI 726
           K +E+VK ED+ LG T+  N      + R+ +G IV ++   + GD +
Sbjct: 234 KVVEVVKDEDSYLGATVR-NENNKIIVGRVVKGGIVEKMNLFQEGDEL 280


>Z82279-2|CAB05260.2|  256|Caenorhabditis elegans Hypothetical
           protein R03C1.3a protein.
          Length = 256

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -3

Query: 471 ENS*HSAIFSYNSLTLEKPEMRPNG 397
           EN  HS+ +S ++L LEK E  P+G
Sbjct: 20  ENRKHSSTYSISNLLLEKKESSPSG 44


>Z66511-1|CAA91314.1|  537|Caenorhabditis elegans Hypothetical
           protein F07A11.1 protein.
          Length = 537

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +1

Query: 511 VDMKKLLGGQIGLEDFIFAHRKGRPKEIEIVKTEDA 618
           ++MKK       LE++IF H   R +++E+   +DA
Sbjct: 257 IEMKKRRPKSPVLENYIFRHESPRSRDVEVRTRKDA 292


>AY151209-1|AAN72826.1|  256|Caenorhabditis elegans COG-1A protein.
          Length = 256

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -3

Query: 471 ENS*HSAIFSYNSLTLEKPEMRPNG 397
           EN  HS+ +S ++L LEK E  P+G
Sbjct: 20  ENRKHSSTYSISNLLLEKKESSPSG 44


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,880,469
Number of Sequences: 27780
Number of extensions: 327442
Number of successful extensions: 675
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)