Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021004
         (715 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q600C9 Cluster: Putative uncharacterized protein; n=1; ...    34   3.0  
UniRef50_Q838Q4 Cluster: Putative uncharacterized protein; n=1; ...    34   4.0  
UniRef50_Q8IEN1 Cluster: Putative uncharacterized protein MAL13P...    34   4.0  
UniRef50_A1Z398 Cluster: NADH-ubiquinone oxidoreductase chain 5;...    33   5.3  
UniRef50_UPI0000499F34 Cluster: hypothetical protein 60.t00018; ...    33   7.0  
UniRef50_Q8I480 Cluster: Putative uncharacterized protein PFE010...    33   7.0  
UniRef50_Q2SRW9 Cluster: Membrane protein, putative; n=3; Mollic...    33   9.2  

>UniRef50_Q600C9 Cluster: Putative uncharacterized protein; n=1;
           Mycoplasma hyopneumoniae 232|Rep: Putative
           uncharacterized protein - Mycoplasma hyopneumoniae
           (strain 232)
          Length = 353

 Score = 34.3 bits (75), Expect = 3.0
 Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 11/84 (13%)
 Frame = +3

Query: 81  VKK*KTQTTNLINCSVSLIYVTIRYLLNLNALSLDYNLDRQLQLI-----NY---KILIY 236
           +KK K +T +  N ++SLIY+T+ YL+    +  D  +DR+  ++     NY   K ++ 
Sbjct: 64  IKKLK-ETWSFFNWNISLIYITVNYLIKAEIIQAD-KIDRKWYILKILDFNYYFPKKVLD 121

Query: 237 IFIYQRILKFN---IIMYLHKLRI 299
           + I ++++K N   I  +L KL I
Sbjct: 122 LVIQKKLVKANYLRIYQFLSKLAI 145


>UniRef50_Q838Q4 Cluster: Putative uncharacterized protein; n=1;
           Enterococcus faecalis|Rep: Putative uncharacterized
           protein - Enterococcus faecalis (Streptococcus faecalis)
          Length = 530

 Score = 33.9 bits (74), Expect = 4.0
 Identities = 18/37 (48%), Positives = 22/37 (59%)
 Frame = +3

Query: 144 TIRYLLNLNALSLDYNLDRQLQLINYKILIYIFIYQR 254
           TIRY LN     LD +L   LQL+NY+I  YI   +R
Sbjct: 484 TIRYRLNKVEQLLDIDLANPLQLLNYEIATYIIKMRR 520


>UniRef50_Q8IEN1 Cluster: Putative uncharacterized protein MAL13P1.39;
            n=1; Plasmodium falciparum 3D7|Rep: Putative
            uncharacterized protein MAL13P1.39 - Plasmodium
            falciparum (isolate 3D7)
          Length = 6088

 Score = 33.9 bits (74), Expect = 4.0
 Identities = 29/108 (26%), Positives = 50/108 (46%)
 Frame = +3

Query: 246  YQRILKFNIIMYLHKLRII*SKIQTNGQ*T*NSVMYFQTEAQGY*SFSMFPKGDWSSIL* 425
            Y +   FNI+  L KL +       N +   N ++Y+ T  Q +  +       +S  + 
Sbjct: 3903 YNKTYNFNILKILDKLNVGLKASFYNNK---NILLYYYTFQQYFYLYKFLEDKYYSECVL 3959

Query: 426  NDHLF*SKIPLNVCSIKRIKLVFKEIYVNNYYKKPHILLLFTIMYVYY 569
            +++L      LN   IK  K +  E+Y N+ Y+    LLL  ++Y+YY
Sbjct: 3960 SEYLL-----LN---IKNNKFIENELYNNDLYRIHTDLLLNFLIYIYY 3999


>UniRef50_A1Z398 Cluster: NADH-ubiquinone oxidoreductase chain 5;
           n=3; Romanomermis|Rep: NADH-ubiquinone oxidoreductase
           chain 5 - Romanomermis nielseni
          Length = 493

 Score = 33.5 bits (73), Expect = 5.3
 Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
 Frame = +3

Query: 102 TTNLINCSVSLIYVTIRYLLNLNALSLDYNLDRQLQLINYKILIYI-FIYQRILKFNIIM 278
           T NL   SV L Y+ ++ L     +S   NL+  L L+N   +I + FI++ ILKF+II 
Sbjct: 8   TLNLYFFSVPLFYMKMKIL----KVSQFLNLEISLSLLNVIFMISLMFIFKNILKFSII- 62

Query: 279 YLHK 290
           Y+ K
Sbjct: 63  YMSK 66


>UniRef50_UPI0000499F34 Cluster: hypothetical protein 60.t00018;
           n=1; Entamoeba histolytica HM-1:IMSS|Rep: hypothetical
           protein 60.t00018 - Entamoeba histolytica HM-1:IMSS
          Length = 930

 Score = 33.1 bits (72), Expect = 7.0
 Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
 Frame = +3

Query: 426 NDHLF*SKIPLNVCSIKRIKLVFKEIYVNNYYKKPHILLLFT-IMYVYY**LVMAINDYY 602
           N+H+F   I    C I   K  FKEI +    KK  I   F+ ++++        + +Y+
Sbjct: 642 NEHIFIGTIKNTYCDINNFKEWFKEIIIKEINKKKSIKKYFSKVIFI----ANEHLKEYF 697

Query: 603 ESNLIYNVFNWNVTFTVEIILQKKAFHRDPNP 698
           E   I +  N N    +EI+  K+  +   NP
Sbjct: 698 EDKEIESYINMN---KIEIMYNKQEINYYWNP 726


>UniRef50_Q8I480 Cluster: Putative uncharacterized protein PFE0100w;
           n=1; Plasmodium falciparum 3D7|Rep: Putative
           uncharacterized protein PFE0100w - Plasmodium falciparum
           (isolate 3D7)
          Length = 1272

 Score = 33.1 bits (72), Expect = 7.0
 Identities = 21/60 (35%), Positives = 31/60 (51%)
 Frame = +3

Query: 495 KEIYVNNYYKKPHILLLFTIMYVYY**LVMAINDYYESNLIYNVFNWNVTFTVEIILQKK 674
           KE+  N Y  K HILL+    YVY     + I + + S  + + FN N+++  E I  KK
Sbjct: 156 KELIENIYLSKNHILLVIKNSYVYI--YQLDIKNSHISYTLIDSFNLNLSYLRESINNKK 213


>UniRef50_Q2SRW9 Cluster: Membrane protein, putative; n=3;
           Mollicutes|Rep: Membrane protein, putative - Mycoplasma
           capricolum subsp. capricolum (strain California kid /
           ATCC27343 / NCTC 10154)
          Length = 205

 Score = 32.7 bits (71), Expect = 9.2
 Identities = 11/32 (34%), Positives = 24/32 (75%)
 Frame = +2

Query: 269 YNYVPT*IKDYLIKDTNKRSMNLEFSHVFSNR 364
           YN V + IK+Y++K+ +K+++ +EF  V++ +
Sbjct: 38  YNQVRSKIKEYILKNEHKKNLRIEFEKVYARK 69


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 552,243,594
Number of Sequences: 1657284
Number of extensions: 9999587
Number of successful extensions: 19080
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 18217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19074
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 57438021881
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)