Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021003
         (617 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30411| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_31490| Best HMM Match : Aa_trans (HMM E-Value=4.9e-31)              28   7.0  
SB_5745| Best HMM Match : Extensin_2 (HMM E-Value=0.43)                28   7.0  
SB_15458| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_5612| Best HMM Match : WD40 (HMM E-Value=4.4e-18)                   28   7.0  
SB_1296| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.0  

>SB_30411| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 710

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 21/70 (30%), Positives = 31/70 (44%)
 Frame = -3

Query: 513 KRVRLCRAAVLIVRYL*QRHTTLMQ*PLIITATIKAEMTTKARADAGQPQQHFAEGNATG 334
           +RVR  +  V+IV         L   P    +T K E  +   AD G+P +HF   NA  
Sbjct: 120 QRVRAGKRLVVIVTGAYSELEILQNHPGRCQST-KCEEASIPLADLGKPMRHFGNANAID 178

Query: 333 LRNQGMDLTQ 304
           L  +   ++Q
Sbjct: 179 LAKRNTKMSQ 188


>SB_31490| Best HMM Match : Aa_trans (HMM E-Value=4.9e-31)
          Length = 974

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = -3

Query: 150 TXASWYIRLWSLGCEAC*EYGLGRVSTFDSGVGSTSPVRPTLLH 19
           T A+W       G   C   G+G +   +SG+GS  P  P  LH
Sbjct: 633 TLANWITFPIFFGQLTCAYEGIGCIIPIESGMGSNRPRFPLYLH 676


>SB_5745| Best HMM Match : Extensin_2 (HMM E-Value=0.43)
          Length = 607

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 53  PTPLSNVETRPSPYSQHASHPSDHS 127
           P P S V T+P P+S   + P  HS
Sbjct: 100 PQPHSAVHTKPQPHSAATTQPQPHS 124


>SB_15458| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 662

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 17/74 (22%), Positives = 35/74 (47%)
 Frame = -3

Query: 462 QRHTTLMQ*PLIITATIKAEMTTKARADAGQPQQHFAEGNATGLRNQGMDLTQVTQIASC 283
           ++  TL++   ++  T  AE      A + + ++   E   TG   +  + T+V +  S 
Sbjct: 165 EKIVTLLKEIELLRQTRSAENVHVEEATSNEKEREATEVKETGSNEKEREATEVKETESN 224

Query: 282 RQNGDGKVEV*RQK 241
             +GD  VE+ R++
Sbjct: 225 EGSGDALVEILRRE 238


>SB_5612| Best HMM Match : WD40 (HMM E-Value=4.4e-18)
          Length = 736

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
 Frame = +3

Query: 240 SSVFRLRLCHHHFD-GNWLSVLLASNPCLD 326
           S+   +RL H H   GNW S  LA   C D
Sbjct: 500 SAAIAVRLLHQHLGTGNWSSAFLALEGCQD 529


>SB_1296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 954

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
 Frame = +3

Query: 240 SSVFRLRLCHHHFD-GNWLSVLLASNPCLD 326
           S+   +RL H H   GNW S  LA   C D
Sbjct: 347 SAAIAVRLLHQHLGTGNWSSAFLALEGCQD 376


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,674,482
Number of Sequences: 59808
Number of extensions: 320831
Number of successful extensions: 940
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 937
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)