Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021003
(617 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC031021-1|AAH31021.1| 226|Homo sapiens LAPTM4B protein protein. 40 0.005
BC014129-1|AAH14129.1| 226|Homo sapiens LAPTM4B protein protein. 40 0.005
AY261384-1|AAO84265.1| 370|Homo sapiens lysosome-associated tra... 40 0.005
AY057051-1|AAL17908.2| 317|Homo sapiens lysosomal associated tr... 40 0.005
AK075326-1|BAC11549.1| 226|Homo sapiens protein ( Homo sapiens ... 40 0.005
AJ276485-1|CAB81951.1| 283|Homo sapiens integral membrane trans... 40 0.005
AF527412-1|AAP14034.1| 317|Homo sapiens lysosomal associated tr... 40 0.005
AF317417-1|AAK69595.1| 226|Homo sapiens lysosomal-associated tr... 40 0.005
BC038117-1|AAH38117.1| 317|Homo sapiens LAPTM4B protein protein. 40 0.009
AY464186-1|AAS46603.1| 281|Homo sapiens complement inhibitory r... 38 0.021
D14696-1|BAA03522.2| 254|Homo sapiens KIAA0108 protein. 36 0.087
CR456758-1|CAG33039.1| 233|Homo sapiens LAPTM4A protein. 36 0.087
BC093075-1|AAH93075.1| 233|Homo sapiens lysosomal-associated pr... 36 0.087
BC000421-1|AAH00421.1| 233|Homo sapiens lysosomal-associated pr... 36 0.087
AY359028-1|AAQ89387.1| 215|Homo sapiens MTP protein. 36 0.087
AC079145-1|AAX88938.1| 196|Homo sapiens unknown protein. 36 0.087
BC003158-1|AAH03158.1| 233|Homo sapiens lysosomal-associated pr... 35 0.20
AL139100-5|CAI20353.1| 1440|Homo sapiens RP3-349A12.1 protein. 30 5.7
AL033520-3|CAI20282.1| 1440|Homo sapiens RP3-349A12.1 protein. 30 5.7
AB126777-1|BAD32740.1| 1440|Homo sapiens ICBP90 binding protein ... 30 5.7
AK095698-1|BAC04613.1| 242|Homo sapiens protein ( Homo sapiens ... 29 9.9
AC093642-1|AAY15000.1| 242|Homo sapiens unknown protein. 29 9.9
>BC031021-1|AAH31021.1| 226|Homo sapiens LAPTM4B protein protein.
Length = 226
Score = 40.3 bits (90), Expect = 0.005
Identities = 29/140 (20%), Positives = 53/140 (37%), Gaps = 3/140 (2%)
Frame = +2
Query: 83 PSPYSQHASHPSDHSLIYHDAYVGAMVTVGTMALTLIMI--YGAARGKPAYLLPFFCLQT 256
P Y+ +S DA + + + + + + + YGA + + A+++PFFC Q
Sbjct: 50 PDQYNFSSSELGGDFEFMDDANMCIAIAISLLMILICAMATYGAYKQRAAWIIPFFCYQI 109
Query: 257 STLPSPF*RQLAICVTCVKSMP*LRR-PVAFPSAKCCCGCPASXXXXXXXXXXXXXXXXK 433
+ + + +R+ P FP + K
Sbjct: 110 FDFALNMLVAITVLIYPNSIQEYIRQLPPNFPYRDDVMSVNPTCLVLIILLFISIILTFK 169
Query: 434 GYCISVVWRCYKYLTMRTAA 493
GY IS VW CY+Y+ R ++
Sbjct: 170 GYLISCVWNCYRYINGRNSS 189
>BC014129-1|AAH14129.1| 226|Homo sapiens LAPTM4B protein protein.
Length = 226
Score = 40.3 bits (90), Expect = 0.005
Identities = 29/140 (20%), Positives = 53/140 (37%), Gaps = 3/140 (2%)
Frame = +2
Query: 83 PSPYSQHASHPSDHSLIYHDAYVGAMVTVGTMALTLIMI--YGAARGKPAYLLPFFCLQT 256
P Y+ +S DA + + + + + + + YGA + + A+++PFFC Q
Sbjct: 50 PDQYNFSSSELGGDFEFMDDANMCIAIAISLLMILICAMATYGAYKQRAAWIIPFFCYQI 109
Query: 257 STLPSPF*RQLAICVTCVKSMP*LRR-PVAFPSAKCCCGCPASXXXXXXXXXXXXXXXXK 433
+ + + +R+ P FP + K
Sbjct: 110 FDFALNMLVAITVLIYPNSIQEYIRQLPPNFPYRDDVMSVNPTCLVLIILLFISIILTFK 169
Query: 434 GYCISVVWRCYKYLTMRTAA 493
GY IS VW CY+Y+ R ++
Sbjct: 170 GYLISCVWNCYRYINGRNSS 189
>AY261384-1|AAO84265.1| 370|Homo sapiens lysosome-associated
transmembrane protein 4 beta protein.
Length = 370
Score = 40.3 bits (90), Expect = 0.005
Identities = 29/140 (20%), Positives = 53/140 (37%), Gaps = 3/140 (2%)
Frame = +2
Query: 83 PSPYSQHASHPSDHSLIYHDAYVGAMVTVGTMALTLIMI--YGAARGKPAYLLPFFCLQT 256
P Y+ +S DA + + + + + + + YGA + + A+++PFFC Q
Sbjct: 194 PDQYNFSSSELGGDFEFMDDANMCIAIAISLLMILICAMATYGAYKQRAAWIIPFFCYQI 253
Query: 257 STLPSPF*RQLAICVTCVKSMP*LRR-PVAFPSAKCCCGCPASXXXXXXXXXXXXXXXXK 433
+ + + +R+ P FP + K
Sbjct: 254 FDFALNMLVAITVLIYPNSIQEYIRQLPPNFPYRDDVMSVNPTCLVLIILLFISIILTFK 313
Query: 434 GYCISVVWRCYKYLTMRTAA 493
GY IS VW CY+Y+ R ++
Sbjct: 314 GYLISCVWNCYRYINGRNSS 333
>AY057051-1|AAL17908.2| 317|Homo sapiens lysosomal associated
transmembrane protein 4 beta, variant 1 protein.
Length = 317
Score = 40.3 bits (90), Expect = 0.005
Identities = 29/140 (20%), Positives = 53/140 (37%), Gaps = 3/140 (2%)
Frame = +2
Query: 83 PSPYSQHASHPSDHSLIYHDAYVGAMVTVGTMALTLIMI--YGAARGKPAYLLPFFCLQT 256
P Y+ +S DA + + + + + + + YGA + + A+++PFFC Q
Sbjct: 141 PDQYNFSSSELGGDFEFMDDANMCIAIAISLLMILICAMATYGAYKQRAAWIIPFFCYQI 200
Query: 257 STLPSPF*RQLAICVTCVKSMP*LRR-PVAFPSAKCCCGCPASXXXXXXXXXXXXXXXXK 433
+ + + +R+ P FP + K
Sbjct: 201 FDFALNMLVAITVLIYPNSIQEYIRQLPPNFPYRDDVMSVNPTCLVLIILLFISIILTFK 260
Query: 434 GYCISVVWRCYKYLTMRTAA 493
GY IS VW CY+Y+ R ++
Sbjct: 261 GYLISCVWNCYRYINGRNSS 280
>AK075326-1|BAC11549.1| 226|Homo sapiens protein ( Homo sapiens
cDNA PSEC0001 fis, clone NT2RM1000066, moderately
similar to Lysosomal-associated transmembrane protein 4
beta. ).
Length = 226
Score = 40.3 bits (90), Expect = 0.005
Identities = 29/140 (20%), Positives = 53/140 (37%), Gaps = 3/140 (2%)
Frame = +2
Query: 83 PSPYSQHASHPSDHSLIYHDAYVGAMVTVGTMALTLIMI--YGAARGKPAYLLPFFCLQT 256
P Y+ +S DA + + + + + + + YGA + + A+++PFFC Q
Sbjct: 50 PDQYNFSSSELGGDFEFMDDANMCIAIAISLLMILICAMATYGAYKQRAAWIIPFFCYQI 109
Query: 257 STLPSPF*RQLAICVTCVKSMP*LRR-PVAFPSAKCCCGCPASXXXXXXXXXXXXXXXXK 433
+ + + +R+ P FP + K
Sbjct: 110 FDFALNMLVAITVLIYPNSIQEYIRQLPPNFPYRDDVMSVNPTCLVLIILLFISIILTFK 169
Query: 434 GYCISVVWRCYKYLTMRTAA 493
GY IS VW CY+Y+ R ++
Sbjct: 170 GYLISCVWNCYRYINGRNSS 189
>AJ276485-1|CAB81951.1| 283|Homo sapiens integral membrane
transporter protein protein.
Length = 283
Score = 40.3 bits (90), Expect = 0.005
Identities = 29/140 (20%), Positives = 53/140 (37%), Gaps = 3/140 (2%)
Frame = +2
Query: 83 PSPYSQHASHPSDHSLIYHDAYVGAMVTVGTMALTLIMI--YGAARGKPAYLLPFFCLQT 256
P Y+ +S DA + + + + + + + YGA + + A+++PFFC Q
Sbjct: 107 PDQYNFSSSELGGDFEFMDDANMCIAIAISLLMILICAMATYGAYKQRAAWIIPFFCYQI 166
Query: 257 STLPSPF*RQLAICVTCVKSMP*LRR-PVAFPSAKCCCGCPASXXXXXXXXXXXXXXXXK 433
+ + + +R+ P FP + K
Sbjct: 167 FDFALNMLVAITVLIYPNSIQEYIRQLPPNFPYRDDVMSVNPTCLVLIILLFISIILTFK 226
Query: 434 GYCISVVWRCYKYLTMRTAA 493
GY IS VW CY+Y+ R ++
Sbjct: 227 GYLISCVWNCYRYINGRNSS 246
>AF527412-1|AAP14034.1| 317|Homo sapiens lysosomal associated
transmembrane protein 4 beta variant 2 protein.
Length = 317
Score = 40.3 bits (90), Expect = 0.005
Identities = 29/140 (20%), Positives = 53/140 (37%), Gaps = 3/140 (2%)
Frame = +2
Query: 83 PSPYSQHASHPSDHSLIYHDAYVGAMVTVGTMALTLIMI--YGAARGKPAYLLPFFCLQT 256
P Y+ +S DA + + + + + + + YGA + + A+++PFFC Q
Sbjct: 141 PDQYNFSSSELGGDFEFMDDANMCIAIAISLLMILICAMATYGAYKQRAAWIIPFFCYQI 200
Query: 257 STLPSPF*RQLAICVTCVKSMP*LRR-PVAFPSAKCCCGCPASXXXXXXXXXXXXXXXXK 433
+ + + +R+ P FP + K
Sbjct: 201 FDFALNMLVAITVLIYPNSIQEYIRQLPPNFPYRDDVMSVNPTCLVLIILLFISIILTFK 260
Query: 434 GYCISVVWRCYKYLTMRTAA 493
GY IS VW CY+Y+ R ++
Sbjct: 261 GYLISCVWNCYRYINGRNSS 280
>AF317417-1|AAK69595.1| 226|Homo sapiens lysosomal-associated
transmembrane protein 4 beta protein.
Length = 226
Score = 40.3 bits (90), Expect = 0.005
Identities = 29/140 (20%), Positives = 53/140 (37%), Gaps = 3/140 (2%)
Frame = +2
Query: 83 PSPYSQHASHPSDHSLIYHDAYVGAMVTVGTMALTLIMI--YGAARGKPAYLLPFFCLQT 256
P Y+ +S DA + + + + + + + YGA + + A+++PFFC Q
Sbjct: 50 PDQYNFSSSELGGDFEFMDDANMCIAIAISLLMILICAMATYGAYKQRAAWIIPFFCYQI 109
Query: 257 STLPSPF*RQLAICVTCVKSMP*LRR-PVAFPSAKCCCGCPASXXXXXXXXXXXXXXXXK 433
+ + + +R+ P FP + K
Sbjct: 110 FDFALNMLVAITVLIYPNSIQEYIRQLPPNFPYRDDVMSVNPTCLVLIILLFISIILTFK 169
Query: 434 GYCISVVWRCYKYLTMRTAA 493
GY IS VW CY+Y+ R ++
Sbjct: 170 GYLISCVWNCYRYINGRNSS 189
>BC038117-1|AAH38117.1| 317|Homo sapiens LAPTM4B protein protein.
Length = 317
Score = 39.5 bits (88), Expect = 0.009
Identities = 24/99 (24%), Positives = 39/99 (39%), Gaps = 1/99 (1%)
Frame = +2
Query: 200 YGAARGKPAYLLPFFCLQTSTLPSPF*RQLAICVTCVKSMP*LRR-PVAFPSAKCCCGCP 376
YGA + + A+++PFFC Q + + + +R+ P FP
Sbjct: 182 YGAYKQRAAWIIPFFCYQIFDFALNMLVAITVLIYPNSIQEYIRQLPPNFPYRDDVMSVN 241
Query: 377 ASXXXXXXXXXXXXXXXXKGYCISVVWRCYKYLTMRTAA 493
+ KGY IS VW CY+Y+ R ++
Sbjct: 242 PTCLVLIILLFISIILTFKGYLISCVWNCYRYINGRNSS 280
>AY464186-1|AAS46603.1| 281|Homo sapiens complement inhibitory
receptor protein.
Length = 281
Score = 38.3 bits (85), Expect = 0.021
Identities = 33/131 (25%), Positives = 49/131 (37%), Gaps = 1/131 (0%)
Frame = +2
Query: 92 YSQHASHPSDHSLIYH-DAYVGAMVTVGTMALTLIMIYGAARGKPAYLLPFFCLQTSTLP 268
Y+Q S I H Y+ VT ++A M++GA +P +LLPFF +Q L
Sbjct: 8 YTQKNERGSHEVKIKHFSPYIAVCVTTFSLAFCCFMVHGAITKQPTHLLPFFFIQVFDLT 67
Query: 269 SPF*RQLAICVTCVKSMP*LRRPVAFPSAKCCCGCPASXXXXXXXXXXXXXXXXKGYCIS 448
L + S LR + + ++ K Y +
Sbjct: 68 ICLIHILGF----MSSTSDLRLMIHTKTGPIY--IKSTGFTFIILSISCMMLAFKAYRLG 121
Query: 449 VVWRCYKYLTM 481
VW CYKYL +
Sbjct: 122 TVWDCYKYLML 132
>D14696-1|BAA03522.2| 254|Homo sapiens KIAA0108 protein.
Length = 254
Score = 36.3 bits (80), Expect = 0.087
Identities = 25/112 (22%), Positives = 46/112 (41%), Gaps = 4/112 (3%)
Frame = +2
Query: 161 VTVGTMALTLIMIYGAARGKPAYLLPFFCLQTSTLPSPF*RQLAICVTCVKSMP*LRRPV 340
V+V ++ +++YGA + +L+PFFC + F + ++ + +P ++ +
Sbjct: 107 VSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFD----FVLSCLVAISSLTYLPRIKEYL 162
Query: 341 A----FPSAKCCCGCPASXXXXXXXXXXXXXXXXKGYCISVVWRCYKYLTMR 484
FP +S K Y I+ VW CYKY+ R
Sbjct: 163 DQLPDFPYKDDLLALDSSCLLFIVLVFFALFIIFKAYLINCVWNCYKYINNR 214
>CR456758-1|CAG33039.1| 233|Homo sapiens LAPTM4A protein.
Length = 233
Score = 36.3 bits (80), Expect = 0.087
Identities = 25/112 (22%), Positives = 46/112 (41%), Gaps = 4/112 (3%)
Frame = +2
Query: 161 VTVGTMALTLIMIYGAARGKPAYLLPFFCLQTSTLPSPF*RQLAICVTCVKSMP*LRRPV 340
V+V ++ +++YGA + +L+PFFC + F + ++ + +P ++ +
Sbjct: 86 VSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFD----FVLSCLVAISSLTYLPRIKEYL 141
Query: 341 A----FPSAKCCCGCPASXXXXXXXXXXXXXXXXKGYCISVVWRCYKYLTMR 484
FP +S K Y I+ VW CYKY+ R
Sbjct: 142 DQLPDFPYKDDLLALDSSCLLFIVLVFFALFIIFKAYLINCVWNCYKYINNR 193
>BC093075-1|AAH93075.1| 233|Homo sapiens lysosomal-associated
protein transmembrane 4 alpha protein.
Length = 233
Score = 36.3 bits (80), Expect = 0.087
Identities = 25/112 (22%), Positives = 46/112 (41%), Gaps = 4/112 (3%)
Frame = +2
Query: 161 VTVGTMALTLIMIYGAARGKPAYLLPFFCLQTSTLPSPF*RQLAICVTCVKSMP*LRRPV 340
V+V ++ +++YGA + +L+PFFC + F + ++ + +P ++ +
Sbjct: 86 VSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFD----FVLSCLVAISSLTYLPRIKEYL 141
Query: 341 A----FPSAKCCCGCPASXXXXXXXXXXXXXXXXKGYCISVVWRCYKYLTMR 484
FP +S K Y I+ VW CYKY+ R
Sbjct: 142 DQLPDFPYKDDLLALDSSCLLFIVLVFFALFIIFKAYLINCVWNCYKYINNR 193
>BC000421-1|AAH00421.1| 233|Homo sapiens lysosomal-associated
protein transmembrane 4 alpha protein.
Length = 233
Score = 36.3 bits (80), Expect = 0.087
Identities = 25/112 (22%), Positives = 46/112 (41%), Gaps = 4/112 (3%)
Frame = +2
Query: 161 VTVGTMALTLIMIYGAARGKPAYLLPFFCLQTSTLPSPF*RQLAICVTCVKSMP*LRRPV 340
V+V ++ +++YGA + +L+PFFC + F + ++ + +P ++ +
Sbjct: 86 VSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFD----FVLSCLVAISSLTYLPRIKEYL 141
Query: 341 A----FPSAKCCCGCPASXXXXXXXXXXXXXXXXKGYCISVVWRCYKYLTMR 484
FP +S K Y I+ VW CYKY+ R
Sbjct: 142 DQLPDFPYKDDLLALDSSCLLFIVLVFFALFIIFKAYLINCVWNCYKYINNR 193
>AY359028-1|AAQ89387.1| 215|Homo sapiens MTP protein.
Length = 215
Score = 36.3 bits (80), Expect = 0.087
Identities = 25/112 (22%), Positives = 46/112 (41%), Gaps = 4/112 (3%)
Frame = +2
Query: 161 VTVGTMALTLIMIYGAARGKPAYLLPFFCLQTSTLPSPF*RQLAICVTCVKSMP*LRRPV 340
V+V ++ +++YGA + +L+PFFC + F + ++ + +P ++ +
Sbjct: 86 VSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFD----FVLSCLVAISSLTYLPRIKEYL 141
Query: 341 A----FPSAKCCCGCPASXXXXXXXXXXXXXXXXKGYCISVVWRCYKYLTMR 484
FP +S K Y I+ VW CYKY+ R
Sbjct: 142 DQLPDFPYKDDLLALDSSCLLFIVLVFFALFIIFKAYLINCVWNCYKYINNR 193
>AC079145-1|AAX88938.1| 196|Homo sapiens unknown protein.
Length = 196
Score = 36.3 bits (80), Expect = 0.087
Identities = 25/112 (22%), Positives = 46/112 (41%), Gaps = 4/112 (3%)
Frame = +2
Query: 161 VTVGTMALTLIMIYGAARGKPAYLLPFFCLQTSTLPSPF*RQLAICVTCVKSMP*LRRPV 340
V+V ++ +++YGA + +L+PFFC + F + ++ + +P ++ +
Sbjct: 49 VSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFD----FVLSCLVAISSLTYLPRIKEYL 104
Query: 341 A----FPSAKCCCGCPASXXXXXXXXXXXXXXXXKGYCISVVWRCYKYLTMR 484
FP +S K Y I+ VW CYKY+ R
Sbjct: 105 DQLPDFPYKDDLLALDSSCLLFIVLVFFALFIIFKAYLINCVWNCYKYINNR 156
>BC003158-1|AAH03158.1| 233|Homo sapiens lysosomal-associated
protein transmembrane 4 alpha protein.
Length = 233
Score = 35.1 bits (77), Expect = 0.20
Identities = 24/112 (21%), Positives = 46/112 (41%), Gaps = 4/112 (3%)
Frame = +2
Query: 161 VTVGTMALTLIMIYGAARGKPAYLLPFFCLQTSTLPSPF*RQLAICVTCVKSMP*LRRPV 340
V+V ++ +++YG+ + +L+PFFC + F + ++ + +P ++ +
Sbjct: 86 VSVLMFIISSMLVYGSISYQVGWLIPFFCYRLFD----FVLSCLVAISSLTYLPRIKEYL 141
Query: 341 A----FPSAKCCCGCPASXXXXXXXXXXXXXXXXKGYCISVVWRCYKYLTMR 484
FP +S K Y I+ VW CYKY+ R
Sbjct: 142 DQLPDFPYKDDLLALDSSCLLFIVLVFFALFIIFKAYLINCVWNCYKYINNR 193
>AL139100-5|CAI20353.1| 1440|Homo sapiens RP3-349A12.1 protein.
Length = 1440
Score = 30.3 bits (65), Expect = 5.7
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = +2
Query: 2 SSPVSSWSNVGRTGDVLPTPLSNVETRPSPYSQHASHPSDHSLIYHDAYV 151
S P S SNV V +PL N + SP + + PS LI+H V
Sbjct: 1143 SVPPGSLSNVSDNAGVQGSPLVNNYGQGSPAANSSVSPSGEDLIFHPVSV 1192
>AL033520-3|CAI20282.1| 1440|Homo sapiens RP3-349A12.1 protein.
Length = 1440
Score = 30.3 bits (65), Expect = 5.7
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = +2
Query: 2 SSPVSSWSNVGRTGDVLPTPLSNVETRPSPYSQHASHPSDHSLIYHDAYV 151
S P S SNV V +PL N + SP + + PS LI+H V
Sbjct: 1143 SVPPGSLSNVSDNAGVQGSPLVNNYGQGSPAANSSVSPSGEDLIFHPVSV 1192
>AB126777-1|BAD32740.1| 1440|Homo sapiens ICBP90 binding protein 1
protein.
Length = 1440
Score = 30.3 bits (65), Expect = 5.7
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = +2
Query: 2 SSPVSSWSNVGRTGDVLPTPLSNVETRPSPYSQHASHPSDHSLIYHDAYV 151
S P S SNV V +PL N + SP + + PS LI+H V
Sbjct: 1143 SVPPGSLSNVSDNAGVQGSPLVNNYGQGSPAANSSVSPSGEDLIFHPVSV 1192
>AK095698-1|BAC04613.1| 242|Homo sapiens protein ( Homo sapiens
cDNA FLJ38379 fis, clone FEBRA2002986. ).
Length = 242
Score = 29.5 bits (63), Expect = 9.9
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +3
Query: 18 HGAMWGALEMYCPHHCQMWKLVPAHTLNML 107
H WG L CP HC W + H+ N+L
Sbjct: 184 HCPPWGRLHSQCPRHCPPWGRL--HSQNVL 211
>AC093642-1|AAY15000.1| 242|Homo sapiens unknown protein.
Length = 242
Score = 29.5 bits (63), Expect = 9.9
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +3
Query: 18 HGAMWGALEMYCPHHCQMWKLVPAHTLNML 107
H WG L CP HC W + H+ N+L
Sbjct: 184 HCPPWGRLHSQCPRHCPPWGRL--HSQNVL 211
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,805,837
Number of Sequences: 237096
Number of extensions: 1557403
Number of successful extensions: 3467
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 3329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3467
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6635341780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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