Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021003
         (617 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        23   3.2  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   4.2  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    22   4.2  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    22   5.5  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    22   5.5  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    22   5.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.5  

>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +3

Query: 201 TAPLVGNRLICCPSSVFRLRLCHHHFDGNWLSVLLAS 311
           TA L GN        +    L HHH +G   S L++S
Sbjct: 151 TASLAGNVAPASADPMVNYTLGHHHQNGATPSSLVSS 187


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = -2

Query: 268 WQSRSLKTEEGQQISRFPTSGAVDHN 191
           W+  S K  + +++SR  T+G    N
Sbjct: 707 WEGDSFKVSKHEEVSRTSTAGQFPTN 732


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = -2

Query: 220 FPTSGAVDHNQCESHGTHCNHRTHIXIM 137
           +PT   + HN  ++    CN   H+ I+
Sbjct: 203 WPTGRGIYHNDDKTFLVWCNEEDHLRII 230


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -2

Query: 193 NQCESHGTHCNH 158
           NQC++   HC+H
Sbjct: 34  NQCQAVNGHCSH 45


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -2

Query: 193 NQCESHGTHCNH 158
           NQC++   HC+H
Sbjct: 34  NQCQAVNGHCSH 45


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 210 LVGNRLICCPSSVFRLRLCHHHFDGN 287
           + GNRLI   SSV       H +DG+
Sbjct: 175 IFGNRLIEESSSVMEAAYSCHWYDGS 200


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -3

Query: 369  PQQHFAEGNATGLRNQGMDLTQVTQ 295
            P+Q+FA     GL+ Q  +   V Q
Sbjct: 1186 PEQYFATSRIRGLQEQQRNAAMVQQ 1210


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,459
Number of Sequences: 438
Number of extensions: 2799
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)