Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG2015
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1039.04 |||nicotinic acid plasma membrane transporter |Schiz...    26   6.0  
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo...    26   6.0  
SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    26   6.0  
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ...    25   7.9  

>SPAC1039.04 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
 Frame = +3

Query: 135 SFALYLILVY*KETANFL*TDEDVT*KKF---NDSST 236
           +  ++L+L    ETANFL TDE+ T  K    NDSS+
Sbjct: 234 AIVIFLVLPVSVETANFL-TDEEKTLAKMRIENDSSS 269


>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1010

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = -2

Query: 396 TEERRGLARGQRATTEPSI--QHTVPSTLQ 313
           T E +  +RGQ ATT PS+   H  P+  Q
Sbjct: 86  THETQSTSRGQEATTSPSLSASHEKPARPQ 115


>SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 283

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 311 YCSVEGTVCCIDGSVVALC 367
           YC V G+  C+   V+A+C
Sbjct: 70  YCHVSGSNLCVSPDVIAIC 88


>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
           factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/30 (40%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
 Frame = -3

Query: 404 ATKPRRDE--AWLADRERQQNRRYSTQYLQ 321
           A  P+++E  AW+A + RQQ  RY+T+ ++
Sbjct: 442 ANSPKKNEQDAWIAKKRRQQ--RYTTEEMR 469


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,739,655
Number of Sequences: 5004
Number of extensions: 54637
Number of successful extensions: 128
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)