Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG2013
         (704 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    31   0.16 
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    28   1.1  
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    26   6.0  
SPCC61.02 |spt3||histone acetyltransferase complex subunit Spt3|...    25   8.0  

>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 13/19 (68%), Positives = 14/19 (73%)
 Frame = -1

Query: 476 LFSKPFVKTRLPSPPQSTR 420
           L +K F   RLPSPPQSTR
Sbjct: 273 LINKAFTSPRLPSPPQSTR 291


>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1073

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = -2

Query: 247 FTFLCKGISVRPSGVTTGPVALTLSEFDKNSFYLTP*TYITIDIE 113
           + +LC G  VR +G+TTG + +     D +S  +     ITI+++
Sbjct: 834 YRYLCIGTGVRKNGLTTGRLLILTMNKDHDSNAIELRNVITINMK 878


>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1115

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 306 FIQNKVIKNSVMNYEDFNWEFTSSKKY 386
           F Q  VIK S    EDF++ F +  KY
Sbjct: 473 FYQRPVIKYSKFGIEDFDFGFYNKTKY 499


>SPCC61.02 |spt3||histone acetyltransferase complex subunit
           Spt3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 307

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +1

Query: 370 HHQKNIFLLHGVTTGRT 420
           HH KN  L  G+T GRT
Sbjct: 252 HHPKNCSLFDGLTEGRT 268


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,809,212
Number of Sequences: 5004
Number of extensions: 55186
Number of successful extensions: 116
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)