Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG2013
         (704 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    27   0.17 
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    27   0.17 
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    25   0.70 
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   2.1  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   6.5  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    21   8.6  

>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 27.1 bits (57), Expect = 0.17
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = +3

Query: 312 QNKVIKNSVMNYEDFNWEFTSSKKYFSI 395
           + K+I ++  NY+++N  + S K Y++I
Sbjct: 300 ETKIISSNNYNYKNYNNNYNSKKLYYNI 327


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 27.1 bits (57), Expect = 0.17
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = +3

Query: 312 QNKVIKNSVMNYEDFNWEFTSSKKYFSI 395
           + K+I ++  NY+++N  + S K Y++I
Sbjct: 311 ETKIISSNNYNYKNYNNNYNSKKLYYNI 338


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 25.0 bits (52), Expect = 0.70
 Identities = 11/45 (24%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +2

Query: 515 YPQTLSRQSKVIGARPW-CRDVTACDSVAAVTSLRRGTRYSCTVR 646
           + QT+  ++++IG R W  R+   C++  + +   R + + C++R
Sbjct: 339 FKQTICCKTRIIGRRSWVTRESQICNN--SSSDKERNSSFKCSMR 381


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -2

Query: 181 TLSEFDKNSFYLTP 140
           T SEFD+ SFY +P
Sbjct: 784 TASEFDEMSFYYSP 797


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +3

Query: 306 FIQNKVIKNSVMNYEDFNWEFTS 374
           FIQ+ + +    N ED +W F +
Sbjct: 460 FIQHHIQRQDEFNAEDQDWGFVA 482


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +2

Query: 434 VAKGDASSRTVLKIIIV*LKLHFSPDYYP 520
           +A GD +      ++I   KLH  P  YP
Sbjct: 427 LASGDYTIPAGCTVVIGTFKLHRQPHIYP 455


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,901
Number of Sequences: 438
Number of extensions: 4293
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)