Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG2011
         (612 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.13 |klp5|sot1|kinesin-like protein Klp5|Schizosaccharom...    26   3.7  
SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c...    26   4.9  
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    25   6.5  
SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase Cmk2|Schiz...    25   6.5  

>SPBC2F12.13 |klp5|sot1|kinesin-like protein
           Klp5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 883

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 13/21 (61%), Positives = 18/21 (85%)
 Frame = -1

Query: 588 INKMEKKNVKNKDNSIRLIKY 526
           INK+EK  VK+ D+SIR++KY
Sbjct: 475 INKVEK--VKHFDDSIRVLKY 493


>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 255 FKELSIF*NYRFFFIICFLVSIIS 184
           FK    F N++FFF+ CF +++ S
Sbjct: 130 FKNCVGFRNHKFFFLECFYLNLYS 153


>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1073

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -1

Query: 231 NYRFFFIICFLVSIISTNEKCTKYQLQFLDG 139
           NY+  FII    SI +    CTKY L  + G
Sbjct: 477 NYQNTFIIITGKSIYAVTPSCTKYNLLEVSG 507


>SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase
           Cmk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 504

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -1

Query: 609 KNIGYIEINKMEKKNVKNKDNSIRLIKYKNYAKL 508
           K I   E+NK +++ V  + N +R +K+KN   L
Sbjct: 94  KVIRKYEMNKKQRQGVFKEVNIMRRVKHKNVVNL 127


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,151,435
Number of Sequences: 5004
Number of extensions: 41665
Number of successful extensions: 104
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)