Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG2011
         (612 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0400 + 2862684-2862872,2862956-2863170,2863298-2863448,286...    28   6.7  
01_07_0187 + 41862342-41862622,41862730-41862912,41863236-418632...    28   6.7  

>06_01_0400 +
           2862684-2862872,2862956-2863170,2863298-2863448,
           2863566-2863757,2864471-2864633,2864754-2864989,
           2865446-2865622,2865707-2865826,2865939-2866241
          Length = 581

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = -2

Query: 224 VFFLSFAFLCQ*YRQMKSVQSTNFSS*MALSRVN-RSFE*TNVLEEASPSFEFVSAPLRQ 48
           VFF     L Q  R ++++   +    M       RS E T+ LEEA  + E V  P  +
Sbjct: 437 VFFTKTNSLVQIRRALRALVDDHTDGLMDFEDTEVRSSEETDALEEARLAIEQVVIPKGE 496

Query: 47  AVEVLP 30
           +V++LP
Sbjct: 497 SVQLLP 502


>01_07_0187 +
           41862342-41862622,41862730-41862912,41863236-41863299,
           41863547-41863756,41863850-41864035,41864180-41864478,
           41864584-41864731,41864798-41864863,41864945-41865217,
           41865523-41865741,41865864-41866013
          Length = 692

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = -1

Query: 594 IEINKMEKKNVKNKDNSIRLIKYKNYAKLKRTP 496
           I+  K+E+K +KN  +SIRL++ +N  K K  P
Sbjct: 280 IDTRKLEEK-LKNVHHSIRLLQCENMLKRKELP 311


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,485,801
Number of Sequences: 37544
Number of extensions: 215449
Number of successful extensions: 468
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)