Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG2011
(612 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49887-3|CAC70079.1| 639|Caenorhabditis elegans Hypothetical pr... 33 0.21
Z49887-2|CAA90057.1| 625|Caenorhabditis elegans Hypothetical pr... 33 0.21
AF068867-1|AAC35506.1| 639|Caenorhabditis elegans putative acti... 33 0.21
U29488-8|AAA68777.1| 320|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z68215-15|CAN86580.1| 1544|Caenorhabditis elegans Hypothetical p... 28 4.6
Z68215-11|CAH60786.1| 1301|Caenorhabditis elegans Hypothetical p... 28 4.6
Z68215-6|CAB54213.2| 1304|Caenorhabditis elegans Hypothetical pr... 28 4.6
Z68215-5|CAA92456.1| 1586|Caenorhabditis elegans Hypothetical pr... 28 4.6
Z68215-4|CAA92457.1| 1584|Caenorhabditis elegans Hypothetical pr... 28 4.6
Z83218-1|CAB05686.1| 282|Caenorhabditis elegans Hypothetical pr... 27 8.0
>Z49887-3|CAC70079.1| 639|Caenorhabditis elegans Hypothetical
protein F09B9.2b protein.
Length = 639
Score = 32.7 bits (71), Expect = 0.21
Identities = 11/20 (55%), Positives = 17/20 (85%)
Frame = +3
Query: 36 DFYRLPQWRRNELKRRARLF 95
+FY+LP+W+R LKR+ +LF
Sbjct: 620 EFYKLPEWKRINLKRKHKLF 639
>Z49887-2|CAA90057.1| 625|Caenorhabditis elegans Hypothetical
protein F09B9.2a protein.
Length = 625
Score = 32.7 bits (71), Expect = 0.21
Identities = 11/20 (55%), Positives = 17/20 (85%)
Frame = +3
Query: 36 DFYRLPQWRRNELKRRARLF 95
+FY+LP+W+R LKR+ +LF
Sbjct: 606 EFYKLPEWKRINLKRKHKLF 625
>AF068867-1|AAC35506.1| 639|Caenorhabditis elegans putative
actin-binding proteinUNC-115 protein.
Length = 639
Score = 32.7 bits (71), Expect = 0.21
Identities = 11/20 (55%), Positives = 17/20 (85%)
Frame = +3
Query: 36 DFYRLPQWRRNELKRRARLF 95
+FY+LP+W+R LKR+ +LF
Sbjct: 620 EFYKLPEWKRINLKRKHKLF 639
>U29488-8|AAA68777.1| 320|Caenorhabditis elegans Hypothetical
protein C56C10.9 protein.
Length = 320
Score = 28.7 bits (61), Expect = 3.5
Identities = 18/53 (33%), Positives = 31/53 (58%)
Frame = -1
Query: 393 ILKPIVKMILCTTSLLIF*NDSFFLQNKHFWG*PLIQSDN*NDLVRFKELSIF 235
+LKP++ + + +++L I N S FL+N H PL + ND +F++ IF
Sbjct: 1 MLKPLLAIFMISSALSIPLNRSDFLENDHVELMPLEKDGELND--KFRQEMIF 51
>Z68215-15|CAN86580.1| 1544|Caenorhabditis elegans Hypothetical
protein C53B4.4e protein.
Length = 1544
Score = 28.3 bits (60), Expect = 4.6
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +3
Query: 429 GKNACLCYFIKLRFNFRRAVACTACALVLHN 521
GKN+ C + + R A +C+ C ++ HN
Sbjct: 1223 GKNSTTCAMCRGKIWLRNASSCSRCLVICHN 1253
>Z68215-11|CAH60786.1| 1301|Caenorhabditis elegans Hypothetical
protein C53B4.4d protein.
Length = 1301
Score = 28.3 bits (60), Expect = 4.6
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +3
Query: 429 GKNACLCYFIKLRFNFRRAVACTACALVLHN 521
GKN+ C + + R A +C+ C ++ HN
Sbjct: 943 GKNSTTCAMCRGKIWLRNASSCSRCLVICHN 973
>Z68215-6|CAB54213.2| 1304|Caenorhabditis elegans Hypothetical protein
C53B4.4c protein.
Length = 1304
Score = 28.3 bits (60), Expect = 4.6
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +3
Query: 429 GKNACLCYFIKLRFNFRRAVACTACALVLHN 521
GKN+ C + + R A +C+ C ++ HN
Sbjct: 943 GKNSTTCAMCRGKIWLRNASSCSRCLVICHN 973
>Z68215-5|CAA92456.1| 1586|Caenorhabditis elegans Hypothetical protein
C53B4.4b protein.
Length = 1586
Score = 28.3 bits (60), Expect = 4.6
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +3
Query: 429 GKNACLCYFIKLRFNFRRAVACTACALVLHN 521
GKN+ C + + R A +C+ C ++ HN
Sbjct: 1225 GKNSTTCAMCRGKIWLRNASSCSRCLVICHN 1255
>Z68215-4|CAA92457.1| 1584|Caenorhabditis elegans Hypothetical protein
C53B4.4a protein.
Length = 1584
Score = 28.3 bits (60), Expect = 4.6
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +3
Query: 429 GKNACLCYFIKLRFNFRRAVACTACALVLHN 521
GKN+ C + + R A +C+ C ++ HN
Sbjct: 1223 GKNSTTCAMCRGKIWLRNASSCSRCLVICHN 1253
>Z83218-1|CAB05686.1| 282|Caenorhabditis elegans Hypothetical
protein C31A11.4 protein.
Length = 282
Score = 27.5 bits (58), Expect = 8.0
Identities = 21/63 (33%), Positives = 30/63 (47%)
Frame = +3
Query: 336 FKKLIRMLYKVSSSQLVLKYQDYLFVIIHSIGKNACLCYFIKLRFNFRRAVACTACALVL 515
F KL +L K+S+ + YL I S+G L + L +F RAVA T +
Sbjct: 60 FNKLYSILMKISADSSIRNLIFYLIWISTSLGN---LRATVALLISFERAVA-TLFPVFY 115
Query: 516 HNF 524
HN+
Sbjct: 116 HNY 118
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,747,201
Number of Sequences: 27780
Number of extensions: 225210
Number of successful extensions: 494
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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