Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG2011
         (612 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      24   1.3  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   5.4  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   5.4  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   5.4  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   5.4  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   7.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.2  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +3

Query: 357 LYKVSSSQLVLKYQDYLFVIIH 422
           L K+ + +L  +Y D+LF ++H
Sbjct: 288 LSKIQTLKLATRYIDFLFQVLH 309


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -1

Query: 201 LVSIISTNEKCTKYQLQFL 145
           L+S+ S +E   KY+++FL
Sbjct: 94  LLSLASPDESSLKYEVEFL 112


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -1

Query: 201 LVSIISTNEKCTKYQLQFL 145
           L+S+ S +E   KY+++FL
Sbjct: 94  LLSLASPDESSLKYEVEFL 112


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -1

Query: 201 LVSIISTNEKCTKYQLQFL 145
           L+S+ S +E   KY+++FL
Sbjct: 145 LLSLASPDESSLKYEVEFL 163


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -1

Query: 201 LVSIISTNEKCTKYQLQFL 145
           L+S+ S +E   KY+++FL
Sbjct: 94  LLSLASPDESSLKYEVEFL 112


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 258 VQDHFNYQTELKAIPKN 308
           VQD F+ Q  +KA+ KN
Sbjct: 297 VQDVFDSQLTVKAVSKN 313


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 101 VLEEASPSFEFVSAPLRQAV 42
           +LE ASP+F   S+P    V
Sbjct: 920 LLERASPAFSGTSSPTNSLV 939


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,610
Number of Sequences: 438
Number of extensions: 2621
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)