Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG2010
         (584 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17C9.02c |lys7||alpha-aminoadipate reductase phosphopantethe...    27   2.7  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    26   3.5  
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma...    25   6.2  
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su...    25   8.1  
SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|...    25   8.1  
SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces po...    25   8.1  

>SPAC17C9.02c |lys7||alpha-aminoadipate reductase
           phosphopantetheinyl transferase Lys7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -1

Query: 353 FLPCHSELCIVNASMVTVRCFVWTCEKHLLPELYLKNLSNILSL 222
           F PC  +L   + S + V   +WTC++ +L  L +    N L +
Sbjct: 147 FTPCEWKLIKSSISSIDVFFLLWTCKEAILKALGIGLSGNPLDI 190


>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 13/40 (32%), Positives = 25/40 (62%)
 Frame = +1

Query: 58   NAEAKRRVLDEVARSESKHFLVLFRDAGCQFRALYSYCPE 177
            +AEA  ++LDE++   S+H ++  +  G    AL+S+ P+
Sbjct: 2403 SAEAIEQLLDEISAESSEHMVICAKLYG----ALFSHLPD 2438


>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 462

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -1

Query: 410 ATRPAYMTKAMSFLLGSCTFLPCHSELCIVNASMVTVRC 294
           A++PA  +K +   +    FL  H  LC      +T RC
Sbjct: 56  ASKPARYSKPLGLFVLDTNFLLSHLSLCQNLIEFLTARC 94


>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
           subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = -3

Query: 198 EFGDEVRFGAVGVERAELAARVPEQHEEVLRLGARHLVQ 82
           +F D   F  +      L +RVP  +E+ L+  A + +Q
Sbjct: 745 DFSDYPEFDIIYERLVSLLSRVPNSYEDTLKFSAINTLQ 783


>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
           Prp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 906

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
 Frame = +1

Query: 169 CPETDLIAKLYGTGPKVVND-----RMFDKFFKYNSGSK 270
           CP+ +++  LY    K VND      +  + F+YNS S+
Sbjct: 574 CPKAEILWLLYAKERKNVNDIAGARNILGRAFEYNSNSE 612


>SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 586

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -3

Query: 168 VGVERAELAARVPEQHEEVLRLGARHLVQHAPLGL 64
           + V + +  +R+ E+ + +L+L  R + QH  LGL
Sbjct: 137 INVTKNQRMSRMLEERKRLLQLFLRRVAQHPILGL 171


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,858,029
Number of Sequences: 5004
Number of extensions: 29724
Number of successful extensions: 87
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)