Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG2008
         (474 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    25   0.55 
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   1.3  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   3.8  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   5.1  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   8.9  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   8.9  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 24.6 bits (51), Expect = 0.55
 Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = -3

Query: 241 SVVFIDFRLREFF-IFFQIKNRWIHFTYLRRCNSINYIQV 125
           SV  ID   R  F +FF   N +  F YL R   INY  V
Sbjct: 419 SVSKIDRASRIVFPLFFLAINVFYWFAYLSRSERINYYNV 458


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 472 SNCSITYALFLMTFEIVNTHL 410
           S+CS+   L LM F +VN ++
Sbjct: 281 SSCSVFVFLSLMEFAVVNNYM 301


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 339 IANKYKSRIHVLNTVSTLYELVCVRCVLT 425
           IA K+ S   +LN  + ++ELV V  +LT
Sbjct: 254 IAFKFHS---ILNRTNNIFELVTVEPILT 279


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 5/26 (19%), Positives = 18/26 (69%)
 Frame = +3

Query: 393 YELVCVRCVLTISKVMRNSAYVMLQF 470
           ++++C+  V+ +  ++   A+++LQ+
Sbjct: 399 WQMICLIVVIALVSIIMYIAFIILQY 424


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -1

Query: 141 LTTYKFKYLNI 109
           L  YK+KYLN+
Sbjct: 318 LPYYKYKYLNV 328


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -1

Query: 141 LTTYKFKYLNI 109
           L  YK+KYLN+
Sbjct: 318 LPYYKYKYLNV 328


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,829
Number of Sequences: 438
Number of extensions: 2200
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12805416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)