Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG2007
         (643 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ...    49   5e-07
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    31   0.11 
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    27   1.7  
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti...    27   1.7  
SPBC651.03c |gyp10||GTPase activating protein Gyp10|Schizosaccha...    27   2.3  
SPAC17C9.08 |pnu1|nuc1, end1|endodeoxyribonuclease Pnu1|Schizosa...    25   9.3  
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    25   9.3  
SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo...    25   9.3  
SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M...    25   9.3  

>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
           Its3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 742

 Score = 49.2 bits (112), Expect = 5e-07
 Identities = 19/53 (35%), Positives = 31/53 (58%)
 Frame = +1

Query: 25  LLFLGIIDILQSYRLRKKLEHTWKSMIHDGDTVSVHRPSFYAQRFLDFMAKTV 183
           + ++GIID+L  Y   K++EH WK + H    +S   P+ YA RF  F+  ++
Sbjct: 610 IFYIGIIDLLTKYSYVKRVEHLWKGINHSDSVISAVPPAEYASRFYKFVESSI 662


>SPBC3E7.01 |fab1|ste12,
            SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
            Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 31.5 bits (68), Expect = 0.11
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
 Frame = +1

Query: 28   LFLGIIDILQSYRLRKKLEHTW---KSMIHDGDTVSVHRPSFYAQRF 159
            L++GIID +++Y   KKLE +W   K ++  G   ++  P  Y  RF
Sbjct: 1863 LYVGIIDFIRTYTWDKKLE-SWVKEKGLVGRGPEPTIVTPKQYKNRF 1908


>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = -1

Query: 550 KTKSLKEN*LSIIYTKWLHLST--FTRFILDSLYTFIAEDASYNVK 419
           K  SL  N L +++T++ + S   F  +ILD+LY F  E  +  ++
Sbjct: 308 KVFSLAGNCLHLLHTEYKNSSLWKFCSYILDALYVFSGESVNSRIQ 353


>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
           subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = -2

Query: 210 ILTRRYLLENGFSHEI*ESLSVEAGSVDRYSVAIVYHALPSVLELLPETIRLEYVDD 40
           ++ +RY +ENG+SH+      V  G  D   V      LP  ++L  E     YV D
Sbjct: 720 VVEKRYRIENGYSHD----AVVIYGDTDSVMVKFGVKTLPEAMKLGEEA--ANYVSD 770


>SPBC651.03c |gyp10||GTPase activating protein
           Gyp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 373

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
 Frame = -1

Query: 154 SERRS-WV--CGPIQCRHRVSCSSKCARASSGDDTTGV 50
           S R+S WV  CG + CRHR+ C S+    SS  D   V
Sbjct: 39  SLRKSVWVSLCG-LSCRHRMECLSRSTSQSSYADQNQV 75


>SPAC17C9.08 |pnu1|nuc1, end1|endodeoxyribonuclease
           Pnu1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +3

Query: 360 SDNFPLKNFKFP 395
           +DNFPLKNF  P
Sbjct: 261 ADNFPLKNFAVP 272


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 222 GVSAILTRRYLLENGFSH 169
           G  +++ +RYL E GFSH
Sbjct: 53  GSHSVIIQRYLSEGGFSH 70


>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 509

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 593 LSKVTTLTCVTGAKKNEISKRK 528
           L +VT +  +T AKKNE+  RK
Sbjct: 15  LWRVTKIRKLTAAKKNELQNRK 36


>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = -1

Query: 112 HRVSCSSKCARASSGDDTTGVCR*CP 35
           HRVS   K  +A  G D    CR CP
Sbjct: 420 HRVSRDIKKCKAKYGADFDEYCRICP 445


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,307,241
Number of Sequences: 5004
Number of extensions: 44132
Number of successful extensions: 105
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)