Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG2007
         (643 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003130-8|AAB54130.2|  611|Caenorhabditis elegans Pip kinase pr...   108   4e-24
AC024798-4|AAK29922.1|  401|Caenorhabditis elegans Pip kinase pr...    39   0.003
Z67879-6|CAA91791.2| 1482|Caenorhabditis elegans Hypothetical pr...    31   0.93 
AL023817-1|CAA19436.2| 1482|Caenorhabditis elegans Hypothetical ...    31   0.93 
U80029-17|AAB37596.2|  330|Caenorhabditis elegans Serpentine rec...    28   6.5  
U80029-18|AAB37597.2|  330|Caenorhabditis elegans Serpentine rec...    27   8.6  
U80029-16|AAB37595.2|  330|Caenorhabditis elegans Serpentine rec...    27   8.6  
AF016444-13|AAB65926.1|  330|Caenorhabditis elegans Serpentine r...    27   8.6  

>AF003130-8|AAB54130.2|  611|Caenorhabditis elegans Pip kinase
           protein 1 protein.
          Length = 611

 Score =  108 bits (259), Expect = 4e-24
 Identities = 45/64 (70%), Positives = 57/64 (89%)
 Frame = +1

Query: 1   RNARGERLLLFLGIIDILQSYRLRKKLEHTWKSMIHDGDTVSVHRPSFYAQRFLDFMAKT 180
           RN+ G+RL+L+LGIIDILQ+YRL KK+EHTWK+++HDGDT+SVH P+FYA RFL FM + 
Sbjct: 393 RNSNGDRLVLYLGIIDILQNYRLLKKMEHTWKAILHDGDTISVHNPNFYASRFLTFMTEK 452

Query: 181 VFKK 192
           VFKK
Sbjct: 453 VFKK 456


>AC024798-4|AAK29922.1|  401|Caenorhabditis elegans Pip kinase
           protein 2 protein.
          Length = 401

 Score = 38.7 bits (86), Expect = 0.003
 Identities = 16/58 (27%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
 Frame = +1

Query: 16  ERLLLFLGIIDILQSYRLRKKLEHTWKSMIH--DGDTVSVHRPSFYAQRFLDFMAKTV 183
           + L+ F+G++DIL  Y ++K+     K++ +  D + +S  +P  YA+R ++F+++ +
Sbjct: 343 KNLIYFIGLVDILTYYGIKKRSATAAKTVKYGSDAENISTVKPEQYAKRLVEFVSRAL 400


>Z67879-6|CAA91791.2| 1482|Caenorhabditis elegans Hypothetical protein
            VF11C1L.1 protein.
          Length = 1482

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +1

Query: 28   LFLGIIDILQSYRLRKKLEHTWKSMIHDGDTV-SVHRPSFYAQRF 159
            L LGI+D +++Y L KKLE   K +   G  + ++  P  Y  RF
Sbjct: 1414 LILGIVDYMRTYTLDKKLESWVKIVAIPGAHLPTILSPEMYCARF 1458


>AL023817-1|CAA19436.2| 1482|Caenorhabditis elegans Hypothetical
            protein VF11C1L.1 protein.
          Length = 1482

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +1

Query: 28   LFLGIIDILQSYRLRKKLEHTWKSMIHDGDTV-SVHRPSFYAQRF 159
            L LGI+D +++Y L KKLE   K +   G  + ++  P  Y  RF
Sbjct: 1414 LILGIVDYMRTYTLDKKLESWVKIVAIPGAHLPTILSPEMYCARF 1458


>U80029-17|AAB37596.2|  330|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 22 protein.
          Length = 330

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/18 (66%), Positives = 15/18 (83%), Gaps = 1/18 (5%)
 Frame = -3

Query: 491 IDIYEVH-FGFIIHFYSR 441
           I I++VH FGF IHF+SR
Sbjct: 59  IIIFQVHLFGFFIHFFSR 76


>U80029-18|AAB37597.2|  330|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 20 protein.
          Length = 330

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/18 (61%), Positives = 15/18 (83%), Gaps = 1/18 (5%)
 Frame = -3

Query: 491 IDIYEVH-FGFIIHFYSR 441
           I I++VH FGF +HF+SR
Sbjct: 59  IIIFQVHLFGFFVHFFSR 76


>U80029-16|AAB37595.2|  330|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 21 protein.
          Length = 330

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/16 (68%), Positives = 14/16 (87%), Gaps = 1/16 (6%)
 Frame = -3

Query: 485 IYEVH-FGFIIHFYSR 441
           I++VH FGF IHF+SR
Sbjct: 61  IFQVHLFGFFIHFFSR 76


>AF016444-13|AAB65926.1|  330|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 8 protein.
          Length = 330

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/18 (61%), Positives = 15/18 (83%), Gaps = 1/18 (5%)
 Frame = -3

Query: 491 IDIYEVH-FGFIIHFYSR 441
           I I+++H FGF IHF+SR
Sbjct: 59  IIIFQIHLFGFFIHFFSR 76


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,590,910
Number of Sequences: 27780
Number of extensions: 242944
Number of successful extensions: 649
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)