Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG2005
(581 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC15E1.09 |grx2||glutaredoxin Grx2|Schizosaccharomyces pombe|c... 79 5e-16
SPAC4F10.20 |grx1||glutaredoxin Grx1|Schizosaccharomyces pombe|c... 77 1e-15
SPCC1450.06c |grx3||monothiol glutaredoxin Grx3|Schizosaccharomy... 62 4e-11
SPAPB2B4.02 |grx5||monothiol glutaredoxin Grx5|Schizosaccharomyc... 38 8e-04
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c... 33 0.023
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 29 0.65
SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces... 27 2.6
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 26 3.5
SPCC1919.02 |||pig-X|Schizosaccharomyces pombe|chr 3|||Manual 25 6.1
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 25 6.1
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 25 6.1
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 25 6.1
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 25 8.1
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 25 8.1
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 25 8.1
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 25 8.1
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 25 8.1
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 25 8.1
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 25 8.1
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 25 8.1
>SPAC15E1.09 |grx2||glutaredoxin Grx2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 110
Score = 79.0 bits (186), Expect = 5e-16
Identities = 38/89 (42%), Positives = 52/89 (58%)
Frame = +2
Query: 92 EAISKDKVVVFSKSYCPYCKLAKDVFEKVKQPIKVIELNERDDGNTIQDNLAHLTGFRTV 271
+AIS + V VFSKS+CP+CK AK+ K P K EL++ ++G+ IQ L T TV
Sbjct: 11 KAISNNPVTVFSKSFCPFCKAAKNTLTKYSAPYKAYELDKIENGSDIQAYLHEKTKQSTV 70
Query: 272 PQVFINGNCVGGGSDVKALYESGKLEPML 358
P +F +GG SD+ L SG L M+
Sbjct: 71 PSIFFRNQFIGGNSDLNKLRSSGTLTKMI 99
>SPAC4F10.20 |grx1||glutaredoxin Grx1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 101
Score = 77.4 bits (182), Expect = 1e-15
Identities = 36/87 (41%), Positives = 56/87 (64%)
Frame = +2
Query: 95 AISKDKVVVFSKSYCPYCKLAKDVFEKVKQPIKVIELNERDDGNTIQDNLAHLTGFRTVP 274
A++ + VVVF+KSYCPYC + V K +V +++ ++G+ IQ L TG RTVP
Sbjct: 11 AVADNDVVVFAKSYCPYCHATEKVIADKKIKAQVYQIDLMNNGDEIQSYLLKKTGQRTVP 70
Query: 275 QVFINGNCVGGGSDVKALYESGKLEPM 355
+FI+ VGG SD +AL++ G+L+ +
Sbjct: 71 NIFIHQKHVGGNSDFQALFKKGELDSL 97
>SPCC1450.06c |grx3||monothiol glutaredoxin Grx3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 166
Score = 62.5 bits (145), Expect = 4e-11
Identities = 30/103 (29%), Positives = 56/103 (54%), Gaps = 3/103 (2%)
Frame = +2
Query: 59 PDL*TFNSLSREAISKDKVVVFSKSYCPYCKLAKDVFE---KVKQPIKVIELNERDDGNT 229
P L +S E ++ V++FS+ CPY AK + ++ P V+E+ + +
Sbjct: 50 PKLPAKDSTDFEVFLENPVIIFSRPGCPYSAAAKKLLTETLRLDPPAVVVEVTDYEHTQE 109
Query: 230 IQDNLAHLTGFRTVPQVFINGNCVGGGSDVKALYESGKLEPML 358
++D L+ ++ T+P +F+ G+ +GG V+ALY+ KL+ L
Sbjct: 110 LRDWLSSISDISTMPNIFVGGHSIGGSDSVRALYQEEKLQSTL 152
>SPAPB2B4.02 |grx5||monothiol glutaredoxin Grx5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 146
Score = 38.3 bits (85), Expect = 8e-04
Identities = 24/96 (25%), Positives = 51/96 (53%), Gaps = 7/96 (7%)
Frame = +2
Query: 92 EAISKDKVVVFSKS-----YCPYCKLAKDVF--EKVKQPIKVIELNERDDGNTIQDNLAH 250
+A+ +D +V+F K C + A + E V K++ N + + +++ +
Sbjct: 31 QAVKEDPIVLFMKGTPTRPMCGFSLKAIQILSLENVASD-KLVTYNVLSN-DELREGIKE 88
Query: 251 LTGFRTVPQVFINGNCVGGGSDVKALYESGKLEPML 358
+ + T+PQ++ING VGG + ++++SG+L +L
Sbjct: 89 FSDWPTIPQLYINGEFVGGSDILASMHKSGELHKIL 124
>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 33.5 bits (73), Expect = 0.023
Identities = 15/45 (33%), Positives = 27/45 (60%)
Frame = +2
Query: 224 NTIQDNLAHLTGFRTVPQVFINGNCVGGGSDVKALYESGKLEPML 358
++++ L + + T PQ++I G VGG V + E+G+L+ ML
Sbjct: 198 DSVRQGLKVFSDWPTFPQLYIKGEFVGGLDIVSEMIENGELQEML 242
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 28.7 bits (61), Expect = 0.65
Identities = 14/59 (23%), Positives = 35/59 (59%)
Frame = +2
Query: 71 TFNSLSREAISKDKVVVFSKSYCPYCKLAKDVFEKVKQPIKVIELNERDDGNTIQDNLA 247
TF+S++R + + ++++ KS C Y K+ + + E + + ++L +++ IQ+ +A
Sbjct: 3293 TFDSVNRASKACGPLLLWIKSICNYSKVLEKL-EPLNSEVDRLKLEQKNAEECIQETIA 3350
>SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 338
Score = 26.6 bits (56), Expect = 2.6
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -1
Query: 452 NLKRK*HFICTPKYKFKYANNNKTI 378
N K HF+C KF+ NN K++
Sbjct: 57 NSKANNHFLCNSPLKFEIFNNEKSV 81
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 26.2 bits (55), Expect = 3.5
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +2
Query: 209 ERDDGNTIQDNLAHLTGFRTVPQVFIN 289
ER+ G TIQ H T RTV Q+ N
Sbjct: 108 EREKGITIQSAATHCTWERTVDQIEAN 134
>SPCC1919.02 |||pig-X|Schizosaccharomyces pombe|chr 3|||Manual
Length = 332
Score = 25.4 bits (53), Expect = 6.1
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Frame = +3
Query: 129 NLTVLTVSWQKMFLRK*SNQLKL--LS*MNVMMETPFKIISHI*LVSELYLK 278
N T+ ++S K F R+ N + + LS N +ETPF + H +VSE +++
Sbjct: 36 NNTIDSLSIAKQF-REIKNNINISHLSRENYWVETPFGKVFHSEVVSEEFMQ 86
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 6.1
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 107 DKVVVFSKSYCPYCKLAKDVFEKVKQPIKVI 199
D +++ SKS + K KDV +K+K +I
Sbjct: 566 DNILIHSKSESEHVKHVKDVLQKLKNANLII 596
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 6.1
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 107 DKVVVFSKSYCPYCKLAKDVFEKVKQPIKVI 199
D +++ SKS + K KDV +K+K +I
Sbjct: 566 DNILIHSKSESEHVKHVKDVLQKLKNANLII 596
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 6.1
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 107 DKVVVFSKSYCPYCKLAKDVFEKVKQPIKVI 199
D +++ SKS + K KDV +K+K +I
Sbjct: 566 DNILIHSKSESEHVKHVKDVLQKLKNANLII 596
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 8.1
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 107 DKVVVFSKSYCPYCKLAKDVFEKVKQPIKVI 199
D +++ SKS + K KDV +K+K +I
Sbjct: 566 DDILIHSKSESEHVKHVKDVLQKLKNANLII 596
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 8.1
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 107 DKVVVFSKSYCPYCKLAKDVFEKVKQPIKVI 199
D +++ SKS + K KDV +K+K +I
Sbjct: 566 DDILIHSKSESEHVKHVKDVLQKLKNANLII 596
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 8.1
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 107 DKVVVFSKSYCPYCKLAKDVFEKVKQPIKVI 199
D +++ SKS + K KDV +K+K +I
Sbjct: 566 DDILIHSKSESEHVKHVKDVLQKLKNANLII 596
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 8.1
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 107 DKVVVFSKSYCPYCKLAKDVFEKVKQPIKVI 199
D +++ SKS + K KDV +K+K +I
Sbjct: 566 DDILIHSKSESEHVKHVKDVLQKLKNANLII 596
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 8.1
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 107 DKVVVFSKSYCPYCKLAKDVFEKVKQPIKVI 199
D +++ SKS + K KDV +K+K +I
Sbjct: 566 DDILIHSKSESEHVKHVKDVLQKLKNANLII 596
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 8.1
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 107 DKVVVFSKSYCPYCKLAKDVFEKVKQPIKVI 199
D +++ SKS + K KDV +K+K +I
Sbjct: 566 DDILIHSKSESEHVKHVKDVLQKLKNANLII 596
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 8.1
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 107 DKVVVFSKSYCPYCKLAKDVFEKVKQPIKVI 199
D +++ SKS + K KDV +K+K +I
Sbjct: 566 DDILIHSKSESEHVKHVKDVLQKLKNANLII 596
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 8.1
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 107 DKVVVFSKSYCPYCKLAKDVFEKVKQPIKVI 199
D +++ SKS + K KDV +K+K +I
Sbjct: 566 DDILIHSKSESEHVKHVKDVLQKLKNANLII 596
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,389,395
Number of Sequences: 5004
Number of extensions: 48192
Number of successful extensions: 144
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -