Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG2003
         (676 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006720-5|AAF60449.2|  297|Caenorhabditis elegans Hypothetical ...    30   1.7  
Z36753-16|CAA85338.2|  538|Caenorhabditis elegans Hypothetical p...    28   7.0  
AF187012-1|AAG35182.1|  538|Caenorhabditis elegans nicotinic ace...    28   7.0  
Z46381-7|CAA86518.2|  158|Caenorhabditis elegans Hypothetical pr...    27   9.2  

>AC006720-5|AAF60449.2|  297|Caenorhabditis elegans Hypothetical
           protein Y17G9B.8 protein.
          Length = 297

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 355 NDSFLSGHCEPYPVVNKFIIVTR 423
           +DS+ SG C P PV  K+++  R
Sbjct: 255 DDSYASGFCPPMPVAQKYVVAFR 277


>Z36753-16|CAA85338.2|  538|Caenorhabditis elegans Hypothetical
           protein T09A5.3 protein.
          Length = 538

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 10/37 (27%), Positives = 23/37 (62%)
 Frame = +3

Query: 387 LPCSK*VHNSNSYLIKIIILLMNVYKMIMLKIHTIRK 497
           L C K +  + S L  I++ ++ +Y++++ ++  IRK
Sbjct: 451 LACEKSLRENGSELANILVTILKMYEVMVSQVERIRK 487


>AF187012-1|AAG35182.1|  538|Caenorhabditis elegans nicotinic
           acetylcholine receptor-like subunit ACR-7 protein.
          Length = 538

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 10/37 (27%), Positives = 23/37 (62%)
 Frame = +3

Query: 387 LPCSK*VHNSNSYLIKIIILLMNVYKMIMLKIHTIRK 497
           L C K +  + S L  I++ ++ +Y++++ ++  IRK
Sbjct: 451 LACEKSLRENGSELANILVTILKMYEVMVSQVERIRK 487


>Z46381-7|CAA86518.2|  158|Caenorhabditis elegans Hypothetical
           protein M01F1.6 protein.
          Length = 158

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 545 YHTKKKRLCMSLNKLLFPYCMYFKHY 468
           Y T  K  C  L+KL+ PY +  KHY
Sbjct: 87  YETCTKEQCEILDKLMTPYWLRPKHY 112


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,995,792
Number of Sequences: 27780
Number of extensions: 249101
Number of successful extensions: 520
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 520
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)