Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG2001
         (654 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0310 + 20114415-20117819                                         29   2.4  
02_05_0966 - 33143383-33143464,33143946-33144087,33144136-331441...    28   5.6  
05_06_0118 + 25735966-25737601,25737698-25738488                       27   9.9  

>05_04_0310 + 20114415-20117819
          Length = 1134

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 7/62 (11%)
 Frame = -3

Query: 244  DWRRNALRYESVYPKKLSLQTI*CPSDIVRNP-------QISISSLISDAEIKISSRIES 86
            +W +   +Y+SV+P+   L+ + CP D+++ P       ++SI +    + +K+SS   S
Sbjct: 868  EWTKEEEKYDSVFPRLRKLKLLSCP-DLIKVPPFPQSVRKVSIENTGFVSHLKLSSSSSS 926

Query: 85   TA 80
             A
Sbjct: 927  KA 928


>02_05_0966 -
           33143383-33143464,33143946-33144087,33144136-33144163,
           33144453-33144631,33144776-33144866,33145643-33145951
          Length = 276

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -2

Query: 599 YKINLKQTKEIGPTGDTSKEKQNCHFYLIPSI 504
           Y ++LKQTK++ P     +EK N H   +P++
Sbjct: 185 YLLSLKQTKDLTP-NQLQQEKLNSHLPFLPAL 215


>05_06_0118 + 25735966-25737601,25737698-25738488
          Length = 808

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 63  FEGKGHAVDSIRDEIFISASEMSD 134
           F GK H + S++ EIFI   E  D
Sbjct: 194 FRGKSHEIHSVKCEIFILGGEEGD 217


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,948,066
Number of Sequences: 37544
Number of extensions: 270063
Number of successful extensions: 477
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 477
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)