Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG2000
         (637 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1434 - 33568258-33569415                                         29   3.1  
02_04_0084 - 19579104-19579230,19580323-19580417,19580578-195807...    29   3.1  

>04_04_1434 - 33568258-33569415
          Length = 385

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +2

Query: 98  DMDFYIFNDIIY**TTRVVYYINTIIIPKHDHAVR 202
           +M FY FN I+Y    R +Y +NTI + +   A++
Sbjct: 132 EMPFYWFNFIVYDDADRRMYCVNTIFVVRLARAIQ 166


>02_04_0084 -
           19579104-19579230,19580323-19580417,19580578-19580719,
           19581155-19581189,19581493-19581632,19581678-19581770,
           19584007-19584244
          Length = 289

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
 Frame = +2

Query: 140 TTRVVYYINTIIIPKHDHAVRAFLRPMRCDVLVFELTKK---RAPWLILPVVICLSQRLS 310
           T + + +I ++I     H +  +L P+R    + +  K+       LILP+  C+S ++ 
Sbjct: 182 TVKAMLHIISLICSSEIHVLFVYLCPVRRWKDITKSQKRCFVSGSRLILPMA-CVSFQVI 240

Query: 311 HACLSASRIKAI 346
            +CLSA+R K I
Sbjct: 241 PSCLSAARFKEI 252


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,213,197
Number of Sequences: 37544
Number of extensions: 268476
Number of successful extensions: 487
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)