Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG2000
         (637 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024791-4|AAK95890.1| 1186|Caenorhabditis elegans Msh (muts hom...    28   4.9  
AF038611-7|AAB92040.1|  466|Caenorhabditis elegans Hypothetical ...    28   6.4  
Z66494-3|CAA91258.2|  520|Caenorhabditis elegans Hypothetical pr...    27   8.5  

>AC024791-4|AAK95890.1| 1186|Caenorhabditis elegans Msh (muts
           homolog) family protein 6 protein.
          Length = 1186

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 20/75 (26%), Positives = 32/75 (42%)
 Frame = +2

Query: 143 TRVVYYINTIIIPKHDHAVRAFLRPMRCDVLVFELTKKRAPWLILPVVICLSQRLSHACL 322
           T + Y IN    P     +R++L    CD    E  +K   WL+ P     S  ++ A  
Sbjct: 593 TSLYYVINKCSTPFGRRLLRSWLLQPTCDPKKLEQRQKAIKWLVSPDA---SSFMTTATA 649

Query: 323 SASRIKAIPRMAQYI 367
           +  +I  + R+ Q I
Sbjct: 650 TLKKIPDLDRLLQKI 664


>AF038611-7|AAB92040.1|  466|Caenorhabditis elegans Hypothetical
           protein E04A4.6 protein.
          Length = 466

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +1

Query: 343 DTANGSIYQFWFLRSYSVTWITVVILELIHAIRTL 447
           D+  G++   WF +++SV WI +V+   I   +T+
Sbjct: 224 DSLPGNVDNNWFEQTFSVYWIPLVVASEIETNQTV 258


>Z66494-3|CAA91258.2|  520|Caenorhabditis elegans Hypothetical
           protein C34C6.3 protein.
          Length = 520

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 385 SYSVTWITVVILELIHAIRTLTSDGMS 465
           SY+V+WIT       + IR + SDG++
Sbjct: 54  SYNVSWITPAASNSTYRIRLIDSDGLT 80


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,313,728
Number of Sequences: 27780
Number of extensions: 242550
Number of successful extensions: 622
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)