Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1994
         (682 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    23   2.7  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   4.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   4.7  

>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
 Frame = +2

Query: 431 LNTPNLRRQINNKR----RFVGNKAVGTQKIHKNPQPQKILRTVEN 556
           LNT +L + ++         VGN AVG    H++ Q Q +    +N
Sbjct: 300 LNTQSLAKAVSKNGVLFVGLVGNSAVGCWNEHQSLQRQNLEMVAQN 345


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +3

Query: 261  NLQSRGMLD*S*NISKCKEEDK*HL*MFFQRPPNSLELLSTKIECSQI 404
            NLQS+   D +  +   +  DK H  +  Q PP++  L  T    S I
Sbjct: 1373 NLQSQDGGDYTCQVENAQGNDKLHYTLTVQVPPSAPVLYVTSSTSSSI 1420


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +3

Query: 261  NLQSRGMLD*S*NISKCKEEDK*HL*MFFQRPPNSLELLSTKIECSQI 404
            NLQS+   D +  +   +  DK H  +  Q PP++  L  T    S I
Sbjct: 1369 NLQSQDGGDYTCQVENAQGNDKLHYTLTVQVPPSAPVLYVTSSTSSSI 1416


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,894
Number of Sequences: 438
Number of extensions: 3210
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)