Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG1992
(729 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.97
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.97
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.97
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.97
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.97
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.97
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 25 0.97
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 25 0.97
AJ968562-1|CAI91546.1| 998|Apis mellifera protein ( Apis mellif... 25 0.97
AY313893-1|AAQ82184.1| 437|Apis mellifera major royal jelly pro... 23 3.9
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 23 3.9
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 23 3.9
AM050259-1|CAJ18340.1| 683|Apis mellifera putative H3K9 methylt... 22 6.8
AY736135-1|AAU84701.1| 253|Apis mellifera take-out-like carrier... 21 9.0
AB244761-1|BAE66603.1| 504|Apis mellifera cystathionine beta-sy... 21 9.0
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 24.6 bits (51), Expect = 0.97
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = -1
Query: 603 QFCGAPGVNLTFFISTSKLTLKYMIKL--PHFLFTKRSLL 490
Q C P V++TF I + TL Y L P L + +LL
Sbjct: 175 QCCPEPYVDVTFTIQIRRRTLYYFFNLIVPCVLISSMALL 214
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 24.6 bits (51), Expect = 0.97
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = -1
Query: 603 QFCGAPGVNLTFFISTSKLTLKYMIKL--PHFLFTKRSLL 490
Q C P V++TF I + TL Y L P L + +LL
Sbjct: 175 QCCPEPYVDVTFTIQIRRRTLYYFFNLIVPCVLISSMALL 214
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 24.6 bits (51), Expect = 0.97
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = -1
Query: 603 QFCGAPGVNLTFFISTSKLTLKYMIKL--PHFLFTKRSLL 490
Q C P V++TF I + TL Y L P L + +LL
Sbjct: 175 QCCPEPYVDVTFTIQIRRRTLYYFFNLIVPCVLISSMALL 214
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 24.6 bits (51), Expect = 0.97
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = -1
Query: 603 QFCGAPGVNLTFFISTSKLTLKYMIKL--PHFLFTKRSLL 490
Q C P V++TF I + TL Y L P L + +LL
Sbjct: 175 QCCPEPYVDVTFTIQIRRRTLYYFFNLIVPCVLISSMALL 214
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 24.6 bits (51), Expect = 0.97
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = -1
Query: 603 QFCGAPGVNLTFFISTSKLTLKYMIKL--PHFLFTKRSLL 490
Q C P V++TF I + TL Y L P L + +LL
Sbjct: 175 QCCPEPYVDVTFTIQIRRRTLYYFFNLIVPCVLISSMALL 214
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 24.6 bits (51), Expect = 0.97
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = -1
Query: 603 QFCGAPGVNLTFFISTSKLTLKYMIKL--PHFLFTKRSLL 490
Q C P V++TF I + TL Y L P L + +LL
Sbjct: 175 QCCPEPYVDVTFTIQIRRRTLYYFFNLIVPCVLISSMALL 214
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 24.6 bits (51), Expect = 0.97
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = -1
Query: 603 QFCGAPGVNLTFFISTSKLTLKYMIKL--PHFLFTKRSLL 490
Q C P V++TF I + TL Y L P L + +LL
Sbjct: 243 QCCPEPYVDVTFTIQIRRRTLYYFFNLIVPCVLISSMALL 282
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 24.6 bits (51), Expect = 0.97
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = -1
Query: 603 QFCGAPGVNLTFFISTSKLTLKYMIKL--PHFLFTKRSLL 490
Q C P V++TF I + TL Y L P L + +LL
Sbjct: 243 QCCPEPYVDVTFTIQIRRRTLYYFFNLIVPCVLISSMALL 282
>AJ968562-1|CAI91546.1| 998|Apis mellifera protein ( Apis mellifera
ORF for hypotheticalprotein. ).
Length = 998
Score = 24.6 bits (51), Expect = 0.97
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +1
Query: 334 RYIDQSRREISIRGRHEQSQR 396
RY ++SRR + +RGR +QR
Sbjct: 723 RYAEKSRRMLYLRGREVVAQR 743
>AY313893-1|AAQ82184.1| 437|Apis mellifera major royal jelly
protein MRJP6 protein.
Length = 437
Score = 22.6 bits (46), Expect = 3.9
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +2
Query: 335 GISISPDGKYLYVADTNNHSVRIVNL 412
G+++SP LY + +HS+ VN+
Sbjct: 256 GMALSPVTNNLYYSPLTSHSLYYVNM 281
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 22.6 bits (46), Expect = 3.9
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = -2
Query: 182 PADAETWRLLLSRRRH-RKQTDSGDYGPRRTTWTPDQ 75
P A + + + SRRR RKQ GD + PDQ
Sbjct: 1755 PPAATSMKSVSSRRRQQRKQQTPGDVESDESESDPDQ 1791
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 22.6 bits (46), Expect = 3.9
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = -2
Query: 182 PADAETWRLLLSRRRH-RKQTDSGDYGPRRTTWTPDQ 75
P A + + + SRRR RKQ GD + PDQ
Sbjct: 1751 PPAATSMKSVSSRRRQQRKQQTPGDVESDESESDPDQ 1787
>AM050259-1|CAJ18340.1| 683|Apis mellifera putative H3K9
methyltransferase protein.
Length = 683
Score = 21.8 bits (44), Expect = 6.8
Identities = 11/41 (26%), Positives = 18/41 (43%)
Frame = +2
Query: 557 VDIKNVKFTPGAPQNWQICVRDSNNKDVTLDDFDFVGCSNK 679
+ ++N+ GAPQN+ V + D +GC K
Sbjct: 398 IRVENIIDLEGAPQNFYYIEEYLPGNGVIIPDDPPIGCECK 438
>AY736135-1|AAU84701.1| 253|Apis mellifera take-out-like carrier
protein JHBP-1 protein.
Length = 253
Score = 21.4 bits (43), Expect = 9.0
Identities = 7/15 (46%), Positives = 9/15 (60%)
Frame = +2
Query: 593 PQNWQICVRDSNNKD 637
P NW+IC R K+
Sbjct: 25 PNNWRICDRSLPQKE 39
>AB244761-1|BAE66603.1| 504|Apis mellifera cystathionine
beta-synthase protein.
Length = 504
Score = 21.4 bits (43), Expect = 9.0
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = -2
Query: 167 TWRLLLSRRRHRKQTDSGDY 108
TW L + H +T +GDY
Sbjct: 13 TWELNATNSPHTCRTKNGDY 32
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,943
Number of Sequences: 438
Number of extensions: 3961
Number of successful extensions: 17
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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