Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG1982
(669 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC631.01c |acp2||F-actin capping protein beta subunit |Schizos... 201 8e-53
SPAPJ696.02 |||actin cortical patch component Lsb4 |Schizosaccha... 29 0.61
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos... 28 1.1
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 27 2.4
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe... 26 4.3
SPBC25B2.04c |||mitochondrial ribosome assembly protein|Schizosa... 26 4.3
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi... 25 7.5
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 25 7.5
>SPAC631.01c |acp2||F-actin capping protein beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 268
Score = 201 bits (490), Expect = 8e-53
Identities = 94/173 (54%), Positives = 120/173 (69%)
Frame = +1
Query: 151 DCALDLMRRLPPQQIEKNLTDLIDLVPSMCDDLLSSVDQPLKIAQDRSNGKDYLLCDYNR 330
D ALDL+RRL P+ I KNL ++ + P + D LLSSVDQPLK+ +G YLLCD+NR
Sbjct: 5 DAALDLLRRLNPKDISKNLDTILSVAPDLADVLLSSVDQPLKVNTCSESGNQYLLCDFNR 64
Query: 331 DGDSYRSPWSNTYDPPLDDGSMPSERLRKLEIDANLAFDQYREMYFEGGVSSVYLWDMDH 510
DGDSYRSPWSN YDPPL+DG + ++R+RKLE+ N A Y ++Y+EGGVSSVYLWD D
Sbjct: 65 DGDSYRSPWSNKYDPPLEDGLVSTDRVRKLEVSLNEAIRVYLDLYYEGGVSSVYLWDQDD 124
Query: 511 GFAGVILIKKAGDGSQKIKGCWDSIHVVEVIEKSSGRNAHYKLTSTAMLWLQT 669
+AG +LIKKA S WDSIHV E + + Y+LTST +L+L +
Sbjct: 125 SYAGAVLIKKA---STSNSSGWDSIHVFECLPTTETNVYDYRLTSTIILFLSS 174
>SPAPJ696.02 |||actin cortical patch component Lsb4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 29.1 bits (62), Expect = 0.61
Identities = 19/59 (32%), Positives = 27/59 (45%)
Frame = +1
Query: 211 DLIDLVPSMCDDLLSSVDQPLKIAQDRSNGKDYLLCDYNRDGDSYRSPWSNTYDPPLDD 387
D+ + VP DD + P + R + D Y+R GDSYRS S +D +D
Sbjct: 225 DIYNDVPIYADDEPEDIWGPSSKSTKRRDSADRS-SSYSRRGDSYRSNRSRAHDDDDED 282
>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 785
Score = 28.3 bits (60), Expect = 1.1
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
Frame = +1
Query: 169 MRRLPPQQIEKNLTDLIDLVPSMCDDLLSS-VDQPLKIAQDRSNGKDYLLCDYNRDGDSY 345
M P + + + D+ D + S DD LS + + K D +G+ + ++ D
Sbjct: 14 MNDSPSTKEKADSVDISDYIVSHSDDSLSKDIKKDTKSFLDVEHGEISTVDEFEEDSPY- 72
Query: 346 RSPWSNTYDPPLDDGSMPSERLR 414
P PP DD SMP +R
Sbjct: 73 --PEVRAAVPPTDDPSMPCNTIR 93
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 27.1 bits (57), Expect = 2.4
Identities = 18/62 (29%), Positives = 28/62 (45%)
Frame = +1
Query: 271 LKIAQDRSNGKDYLLCDYNRDGDSYRSPWSNTYDPPLDDGSMPSERLRKLEIDANLAFDQ 450
++I ++ SN L Y D P YD L+DG +E+ +++ N F Q
Sbjct: 1428 VRIQKNFSNQMCLLSIQYRMHPDISHFPSKKFYDSRLEDGDNMAEKTQQV-WHVNPKFTQ 1486
Query: 451 YR 456
YR
Sbjct: 1487 YR 1488
>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 687
Score = 26.2 bits (55), Expect = 4.3
Identities = 18/79 (22%), Positives = 31/79 (39%), Gaps = 1/79 (1%)
Frame = -3
Query: 394 WSHHLMVGRKYSTKE-TYRSHRRDCNRIINSLSRCYDPEQSLEADLLMIIGRHTYSERDL 218
WS L + S E T + + ++I+ CYDP A L + H R +
Sbjct: 26 WSILLTNNKPMSGSENTLNNESHEMSQILKKSGLCYDPRMRFHA-TLSEVDDHPEDPRRV 84
Query: 217 SNLLNSFRSAEGAASASSP 161
+ + + A ++ SP
Sbjct: 85 LRVFEAIKKAGYVSNVPSP 103
>SPBC25B2.04c |||mitochondrial ribosome assembly
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 328
Score = 26.2 bits (55), Expect = 4.3
Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Frame = +1
Query: 304 DYLLCDYNRDGDSYRSPWS---NTYDPPLDDGSMPSERLRKLEIDANLAFDQYREMYFEG 474
DYLL NR S S WS N D L + + + +L K D N + + Y G
Sbjct: 240 DYLLFHLNRIDPSLYSKWSLPTNDVDEFLQNTAYKARKLTKGGFDENFVSNYVIQQYRIG 299
Query: 475 GVSSVYLWDMD 507
+ L +D
Sbjct: 300 RLGRFQLDTID 310
>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 865
Score = 25.4 bits (53), Expect = 7.5
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = -3
Query: 310 NSLSRCYDP-EQSLEADLLMIIGRHTYSERDLSNLLNSFRSAEGAASASSPVHN 152
+SLSR ++S D+L + S + + +L +SF S + ASAS P +N
Sbjct: 681 SSLSRAPSTSKKSHFEDILGLFASPAPSAQPVDSLASSFASLDFNASASQPSNN 734
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 25.4 bits (53), Expect = 7.5
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = +1
Query: 340 SYRSPWSNTYDPPLDDGSMPSERLRKLEIDANLAFDQYREMYFEGGVSSVY 492
S SP +Y PP S+ S R+ + ++ + YR++ E S+ Y
Sbjct: 64 SNNSPHRFSYSPPQHPASINSRRVASYTVQSSPSRTTYRQLPNEPQNSAAY 114
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,719,021
Number of Sequences: 5004
Number of extensions: 55757
Number of successful extensions: 166
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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