Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1982
         (669 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     24   1.5  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   3.5  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    21   8.0  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    21   8.0  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   8.0  

>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +1

Query: 169 MRRLPPQQIEKNLTDLIDL-VPSMCDDLLSSVDQPLKIAQDRSNGKDYLLCD 321
           +R L  + I++  +D+ +L V   C DL S ++  L+  +    GKD L  D
Sbjct: 156 IRTLLDESIQRK-SDITELDVSKRCKDLASFMENLLQETRTPGFGKDVLATD 206


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +1

Query: 301 KDYLLCDYNRD 333
           K YL CDY+RD
Sbjct: 41  KLYLFCDYDRD 51


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +1

Query: 274 KIAQDRSNGKDYLLCDYNRDGDSYRSPWSNTYD 372
           KI    SN  +Y   +YN   ++Y + ++N Y+
Sbjct: 80  KIISSLSN--NYKYSNYNNYNNNYNNNYNNNYN 110


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +1

Query: 274 KIAQDRSNGKDYLLCDYNRDGDSYRSPWSNTYD 372
           KI    SN  +Y   +YN   ++Y + ++N Y+
Sbjct: 80  KIISSLSN--NYKYSNYNNYNNNYNNNYNNNYN 110


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
 Frame = +1

Query: 202 NLTDLIDLVPSMC----DDLLSSVDQPLKIAQDRSNGKDYLLCDYNRDGDSYRSPWSNTY 369
           N++D I L PS      D   SS+D+   +  D S GK  ++    +      + W N  
Sbjct: 788 NISD-IALYPSQTTHGYDIYASSIDKENILFLDLSTGKVEMITGVGKATSPNLTKWGNPN 846

Query: 370 DPPLDDG 390
            P +  G
Sbjct: 847 RPIVQSG 853


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,221
Number of Sequences: 438
Number of extensions: 3752
Number of successful extensions: 27
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)