Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1981
         (771 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|c...    29   0.56 
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||...    29   0.97 
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa...    27   3.0  
SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyce...    27   3.9  
SPBC4B4.01c |||fumble family pantothenate kinase |Schizosaccharo...    26   6.9  
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    26   6.9  
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    26   6.9  
SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr 2|...    26   6.9  
SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharo...    25   9.1  

>SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 29.5 bits (63), Expect = 0.56
 Identities = 17/60 (28%), Positives = 35/60 (58%), Gaps = 9/60 (15%)
 Frame = +1

Query: 127 YFVGFQN-SEVMINRDNWGHSYCDVRGEILG------SSQD--EHQRKHLPKVFSSIKNE 279
           Y VG+ N + ++++   WGHS+ +V  E+L        +QD  E ++K+L ++ +S + +
Sbjct: 142 YIVGYPNEARLLMDNFKWGHSFFEVNEELLDIYAQCHDAQDIQEKEKKYLEEMEASYQEQ 201


>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 28.7 bits (61), Expect = 0.97
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +3

Query: 558 SVGGGAWPFLVGGAICLVNSGNERDSSLLNRRRYLGVRGLVSRNSLTT 701
           ++  G    L  G + ++N G E D  L N  RYL V  L   N++TT
Sbjct: 44  NIDAGTMSPLEHGEVFVLNDGGEVDLDLGNYERYLNVT-LTHDNNITT 90


>SPAC3C7.06c |pit1||serine/threonine protein kinase
           Pit1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 650

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = -2

Query: 503 FPVLSQIKPQAPLLVVPFRQFL*VSALQPYSPRSPKSLVSRKLPA 369
           FPVL QI+P  P L +  R F+  S+    SP++ +    R LP+
Sbjct: 441 FPVLPQIRPSTP-LNLKLRNFIISSSEDSTSPKAKE--FDRPLPS 482


>SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 21/61 (34%), Positives = 27/61 (44%)
 Frame = -1

Query: 555 QERAVNLSILPVSGPGEISRVESN*AAGSTPGGALPSIPLSFSFATILPPESKIFGFPEA 376
           +   V L  LP+ G      VES     + P  ALP  PLSFS     P ++     PE+
Sbjct: 398 ENELVKLFFLPLDGD-----VESPHPTSTMPE-ALPREPLSFSLPEKAPEKATNISIPES 451

Query: 375 A 373
           A
Sbjct: 452 A 452


>SPBC4B4.01c |||fumble family pantothenate kinase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 403

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -1

Query: 537 LSILPVSGPGEISRVESN*AAGSTPGGALPSIPLSFSFATIL 412
           +SIL V+GP +  R+  +   G T  G L  +  + SF  +L
Sbjct: 214 VSILKVTGPSQFERIGGSSLGGGTLWGLLSLLTPANSFDEML 255


>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1210

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 606  DKSLHQLRTAMHHHPPNQERAVNLSILPV 520
            D +LH     + +H  + E A NLSILP+
Sbjct: 1061 DDNLHHGEIYLRNHILSDEMANNLSILPI 1089


>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 172 NWGHSYCDVRGEILGSSQDEHQRKHLPKVFSSIKNE 279
           NW   +  ++G I  SSQ E    +L KV  SI +E
Sbjct: 123 NWNDFFASLQGVIAASSQSEFSNFYL-KVLLSIGDE 157


>SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 554

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 572 TTTHRIKKELLICQSFRCPGLVRFPVLSQIKP 477
           T   R+ K  +     RCP ++R+P L  IKP
Sbjct: 375 TAPSRLSKGFITEGGIRCPAIIRYPPL--IKP 404


>SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharomyc
           es pombe|chr 2|||Manual
          Length = 372

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 19/79 (24%), Positives = 28/79 (35%), Gaps = 4/79 (5%)
 Frame = +3

Query: 246 FAKGVFINQERKLEVRRRLDTA----LVLTVNMSSSDPPTLLQWLGGQLPGNQRFWTPGG 413
           F  G+F+ +  K   +R +  A    L    NM             G  P     WT  G
Sbjct: 258 FNAGLFVFKPLKAHYKRLMALARFPKLYDNANMMEQSLLNFAYNSAGAFPWESLDWTFNG 317

Query: 414 VWLQS*NLKELTEGHHQEW 470
           +W +  +L  L   H + W
Sbjct: 318 LWARKNDLPYLKAVHGKHW 336


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,128,911
Number of Sequences: 5004
Number of extensions: 65416
Number of successful extensions: 176
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)