Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1979
         (476 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   1.7  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    22   3.9  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    22   3.9  
DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    21   5.1  
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    21   5.1  
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    21   5.1  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   9.0  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = -3

Query: 96  FILAITCAEWISIVARERRDYFYKPARNST 7
           F LAI    W + ++R  R  +Y    N T
Sbjct: 434 FFLAINVFYWFAYLSRSERINYYNVNSNGT 463


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = -3

Query: 159 NWLILLLCLFV 127
           NWL+L++CL +
Sbjct: 3   NWLLLIVCLSI 13


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -2

Query: 160 KLVNSAFVSVCWILIGYLAFLFYFS 86
           K     F S  +ILI Y  FL++ S
Sbjct: 5   KYFGKNFPSTSFILINYFIFLYFNS 29


>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -2

Query: 457 MPQCVFKSCKKCPKKQ 410
           +P  +   CKKC  KQ
Sbjct: 68  LPDALATDCKKCTDKQ 83


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -2

Query: 457 MPQCVFKSCKKCPKKQ 410
           +P  +   CKKC  KQ
Sbjct: 68  LPDALATDCKKCTDKQ 83


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -2

Query: 457 MPQCVFKSCKKCPKKQ 410
           +P  +   CKKC  KQ
Sbjct: 68  LPDALATDCKKCTDKQ 83


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = -1

Query: 146 CFCVCLLDSHWIL 108
           C  +C+ D HW L
Sbjct: 293 CHILCMSDLHWQL 305


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,755
Number of Sequences: 438
Number of extensions: 2846
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12928545
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)