Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1970
         (591 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   1.7  
DQ325067-1|ABD14081.1|  152|Apis mellifera complementary sex det...    22   3.9  
DQ325066-1|ABD14080.1|  152|Apis mellifera complementary sex det...    22   3.9  
DQ325065-1|ABD14079.1|  152|Apis mellifera complementary sex det...    22   3.9  
DQ325064-1|ABD14078.1|  152|Apis mellifera complementary sex det...    22   3.9  
DQ325063-1|ABD14077.1|  152|Apis mellifera complementary sex det...    22   3.9  
DQ325062-1|ABD14076.1|  152|Apis mellifera complementary sex det...    22   3.9  
DQ325061-1|ABD14075.1|  152|Apis mellifera complementary sex det...    22   3.9  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          22   3.9  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          22   3.9  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          22   3.9  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          22   3.9  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          22   3.9  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          22   3.9  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          22   3.9  
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    22   3.9  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    22   3.9  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   5.2  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    22   5.2  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   6.8  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 121  VETKISFSDGSSTDTLRKLSDDLSRKHLSDHSVI 222
            + T  + S GSS D  R LS+ +     SD+S +
Sbjct: 1312 IATNTTVSSGSSEDHRRPLSEHIYSSIDSDYSTL 1345


>DQ325067-1|ABD14081.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -2

Query: 326 PGANCVSPI*AICPGFVPPTQTR 258
           PG+  + P+    P F+PP   R
Sbjct: 117 PGSRHIGPLTPFPPRFIPPDMYR 139


>DQ325066-1|ABD14080.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -2

Query: 326 PGANCVSPI*AICPGFVPPTQTR 258
           PG+  + P+    P F+PP   R
Sbjct: 117 PGSRHIGPLTPFPPRFIPPDMYR 139


>DQ325065-1|ABD14079.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -2

Query: 326 PGANCVSPI*AICPGFVPPTQTR 258
           PG+  + P+    P F+PP   R
Sbjct: 117 PGSRHIGPLTPFPPRFIPPDMYR 139


>DQ325064-1|ABD14078.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -2

Query: 326 PGANCVSPI*AICPGFVPPTQTR 258
           PG+  + P+    P F+PP   R
Sbjct: 117 PGSRHIGPLTPFPPRFIPPDMYR 139


>DQ325063-1|ABD14077.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -2

Query: 326 PGANCVSPI*AICPGFVPPTQTR 258
           PG+  + P+    P F+PP   R
Sbjct: 117 PGSRHIGPLTPFPPRFIPPDMYR 139


>DQ325062-1|ABD14076.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -2

Query: 326 PGANCVSPI*AICPGFVPPTQTR 258
           PG+  + P+    P F+PP   R
Sbjct: 117 PGSRHIGPLTPFPPRFIPPDMYR 139


>DQ325061-1|ABD14075.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -2

Query: 326 PGANCVSPI*AICPGFVPPTQTR 258
           PG+  + P+    P F+PP   R
Sbjct: 117 PGSRHIGPLTPFPPRFIPPDMYR 139


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -2

Query: 326 PGANCVSPI*AICPGFVPPTQTR 258
           PG+  + P+    P F+PP   R
Sbjct: 366 PGSRHIGPLTPFPPRFIPPDMYR 388


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -2

Query: 326 PGANCVSPI*AICPGFVPPTQTR 258
           PG+  + P+    P F+PP   R
Sbjct: 366 PGSRHIGPLTPFPPRFIPPDMYR 388


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -2

Query: 326 PGANCVSPI*AICPGFVPPTQTR 258
           PG+  + P+    P F+PP   R
Sbjct: 366 PGSRHIGPLTPFPPRFIPPDMYR 388


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -2

Query: 326 PGANCVSPI*AICPGFVPPTQTR 258
           PG+  + P+    P F+PP   R
Sbjct: 366 PGSRHIGPLTPFPPRFIPPDMYR 388


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -2

Query: 326 PGANCVSPI*AICPGFVPPTQTR 258
           PG+  + P+    P F+PP   R
Sbjct: 366 PGSRHIGPLTPFPPRFIPPDMYR 388


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -2

Query: 326 PGANCVSPI*AICPGFVPPTQTR 258
           PG+  + P+    P F+PP   R
Sbjct: 366 PGSRHIGPLTPFPPRFIPPDMYR 388


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -2

Query: 326 PGANCVSPI*AICPGFVPPTQTR 258
           PG+  + P+    P F+PP   R
Sbjct: 365 PGSRHIGPLTPFPPRFIPPDMYR 387


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -2

Query: 326 PGANCVSPI*AICPGFVPPTQTR 258
           PG+  + P+    P F+PP   R
Sbjct: 350 PGSRHIGPLTPFPPRFIPPDMYR 372


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -2

Query: 326 PGANCVSPI*AICPGFVPPTQTR 258
           PG+  + P+    P F+PP   R
Sbjct: 366 PGSRHIGPLTPFPPRFIPPDMYR 388


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 154 STDTLRKLSDDLSRKHLSDHSVILTEDT 237
           S DTLRK++ +     L+  +V LT+ T
Sbjct: 898 SPDTLRKIAQNRGTNPLAPDAVDLTQLT 925


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +1

Query: 397 FQCPEKRGVFSRLTRLTRVPFAIHTPHDASPV 492
           F+C     + + LTRL R    +HT     P+
Sbjct: 3   FRCEPCNKILTSLTRLRRHIQNVHTRPSKEPI 34


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = +1

Query: 289 QIAYIGETQFAPGEWAGIVLDEP 357
           + AY+G+      EW     DEP
Sbjct: 531 EFAYLGKPTKEDSEWPSYSRDEP 553


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,549
Number of Sequences: 438
Number of extensions: 3620
Number of successful extensions: 21
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)