Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1963
         (713 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    77   1e-16
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    22   6.6  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   6.6  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    21   8.8  

>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 77.4 bits (182), Expect = 1e-16
 Identities = 42/129 (32%), Positives = 68/129 (52%)
 Frame = -3

Query: 399 MELTRENSRAMIHYDFRSGLTQKQCVDRMISAFGDEAPSKTTIYRWFAEFQRGRVKLSDD 220
           ME  +E+ R ++ + FR G    Q   ++ + +GDEA  +     WF +F+ G   L D+
Sbjct: 1   MENQKEHYRHILLFYFRKGKNASQAHKKLCAVYGDEALKERQCQNWFDKFRSGDFSLKDE 60

Query: 219 PRQGRPKTAVTQENVDAVRKLIEEDRHVTYREIQATLDIGMSQIQIILHEQLGVKKLFSR 40
            R GRP     + + D ++ +I+ DRH T REI   L +  + I+  L +QLG  +    
Sbjct: 61  KRSGRP----VEVDDDLIKAIIDSDRHSTTREIAEKLHVSHTCIENHL-KQLGYVQKLDT 115

Query: 39  WIPHSLCEE 13
           W+PH L E+
Sbjct: 116 WVPHELKEK 124


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -1

Query: 611 SIKDYWRNHKLYGTRLH*KYREWNISTVPLILKS 510
           +++  ++N KLYG   + + + +NI     IL S
Sbjct: 85  TLRQEYKNIKLYGLTKNLEIKNYNIDWDKCILSS 118


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +3

Query: 96  SCQCLKLPEFRGMSHVDLPQSAYAQHQR 179
           S Q +  P F   + +D+  + Y QHQ+
Sbjct: 71  SQQDMPYPRFPPYNRMDMRNATYYQHQQ 98


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 11/26 (42%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
 Frame = -1

Query: 635 WMGLVKLPSIKDYWRNH-KLYGTRLH 561
           W+G   L S    WRNH KL     H
Sbjct: 121 WLGDGLLISTGQKWRNHRKLIAPTFH 146


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,583
Number of Sequences: 438
Number of extensions: 4326
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)