Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1962
         (547 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    23   2.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.7  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   6.2  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   8.2  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +1

Query: 424 SDEDDVVINAFKTFDEEGK 480
           ++ D+ ++NAFKT  +E K
Sbjct: 128 TERDNHLVNAFKTLTQEPK 146


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -2

Query: 441 DVIFVRAAGHAVGE 400
           D+I+VRA G AVG+
Sbjct: 34  DIIWVRADGSAVGD 47


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +3

Query: 246 PANGPRQGWHHRQERLARHL 305
           P  GP    HH Q +  +HL
Sbjct: 345 PTMGPPHHHHHHQTQSLQHL 364


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 305 KVARKSFLPMMPSLSWSISWNASLNSAT 222
           K+ARK F      L  S SW++  N+ T
Sbjct: 343 KLARKQFQKNTTGLERSRSWSSLDNTNT 370


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.316    0.132    0.369 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,616
Number of Sequences: 438
Number of extensions: 1573
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15581757
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)