Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1961
         (745 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    25   0.57 
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    25   0.99 
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    25   0.99 
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    23   3.0  
DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse tr...    23   4.0  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   5.3  
DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex det...    22   5.3  
DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex det...    22   5.3  
DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex det...    22   5.3  
DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex det...    22   5.3  
DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex det...    22   5.3  
DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex det...    22   5.3  
DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex det...    22   5.3  
DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex det...    22   5.3  
AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex det...    22   5.3  
AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex det...    22   5.3  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    22   7.0  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    22   7.0  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    22   7.0  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    21   9.2  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 25.4 bits (53), Expect = 0.57
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -2

Query: 621 YTYPINCFNYEHKSWLASIK 562
           ++Y +NC NY+H + L  +K
Sbjct: 29  FSYLLNCKNYDHPTTLLKLK 48


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 24.6 bits (51), Expect = 0.99
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = +2

Query: 38  DHQGSTSRRHQR*AALVLGEVPTEVTSQEEWAQEQL 145
           D     S  H++   ++L  VP   + Q EW Q  L
Sbjct: 101 DLDNLVSAAHEKGLKIILDFVPNHTSDQHEWFQLSL 136


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 24.6 bits (51), Expect = 0.99
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = +2

Query: 38  DHQGSTSRRHQR*AALVLGEVPTEVTSQEEWAQEQL 145
           D     S  H++   ++L  VP   + Q EW Q  L
Sbjct: 101 DLDNLVSAAHEKGLKIILDFVPNHTSDQHEWFQLSL 136


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 600 NSLSGMYNFNHNKEKEKN 653
           NSLS  YN+N+N     N
Sbjct: 86  NSLSNNYNYNNNYNNYNN 103


>DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 42

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -1

Query: 121 LRRDFGRYFSKY 86
           L++DFG YF +Y
Sbjct: 10  LKKDFGTYFQQY 21


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 6/19 (31%), Positives = 13/19 (68%)
 Frame = +1

Query: 499 TDFCILMTYYPCVVVLCIS 555
           T + ++  Y PCV+++ +S
Sbjct: 244 TGYFLIQVYVPCVLIVVLS 262


>DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 600 NSLSGMYNFNHN 635
           NSLS  YN+N+N
Sbjct: 86  NSLSNNYNYNNN 97


>DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 600 NSLSGMYNFNHN 635
           NSLS  YN+N+N
Sbjct: 86  NSLSNNYNYNNN 97


>DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 600 NSLSGMYNFNHN 635
           NSLS  YN+N+N
Sbjct: 86  NSLSNNYNYNNN 97


>DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 600 NSLSGMYNFNHN 635
           NSLS  YN+N+N
Sbjct: 86  NSLSNNYNYNNN 97


>DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 600 NSLSGMYNFNHN 635
           NSLS  YN+N+N
Sbjct: 86  NSLSNNYNYNNN 97


>DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 600 NSLSGMYNFNHN 635
           NSLS  YN+N+N
Sbjct: 86  NSLSNNYNYNNN 97


>DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 600 NSLSGMYNFNHN 635
           NSLS  YN+N+N
Sbjct: 86  NSLSNNYNYNNN 97


>DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 600 NSLSGMYNFNHN 635
           NSLS  YN+N+N
Sbjct: 86  NSLSNNYNYNNN 97


>AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 600 NSLSGMYNFNHN 635
           NSLS  YN+N+N
Sbjct: 319 NSLSNNYNYNNN 330


>AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 600 NSLSGMYNFNHN 635
           NSLS  YN+N+N
Sbjct: 319 NSLSNNYNYNNN 330


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 600 NSLSGMYNFNHNKEKE 647
           +SLS  YN+N+N  K+
Sbjct: 83  SSLSNNYNYNNNNYKK 98


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 600 NSLSGMYNFNHNKEKE 647
           +SLS  YN+N+N  K+
Sbjct: 83  SSLSNNYNYNNNNYKK 98


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 600 NSLSGMYNFNHNKEKE 647
           +SLS  YN+N+N  K+
Sbjct: 83  SSLSNNYNYNNNNYKK 98


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 600 NSLSGMYNFNHNKEK 644
           +SLS  YN+N+N  K
Sbjct: 316 SSLSNNYNYNNNNYK 330


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,158
Number of Sequences: 438
Number of extensions: 3931
Number of successful extensions: 25
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)