Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1958
         (400 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    24   0.56 
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   6.9  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    20   9.1  
AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    20   9.1  
AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding prote...    20   9.1  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 24.2 bits (50), Expect = 0.56
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = +1

Query: 268 ARAGTPTDLPTASSVSAPTQILHYKH 345
           A    P  LPT  SV A    LH+ H
Sbjct: 449 ATTAAPPQLPTEESVDALCNTLHHWH 474


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = -3

Query: 122 N*YETKYSNVARCVYVCVC*SQQPTVTMTVSTLCG 18
           N Y   Y+N  + +Y  +   +Q  V + V   CG
Sbjct: 341 NNYNNNYNNNCKKLYYNIINIEQIPVPVPVPIYCG 375


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = -3

Query: 122 N*YETKYSNVARCVYVCVC*SQQPTVTMTVSTLCG 18
           N Y   Y+N  + +Y  +   +Q  V + V   CG
Sbjct: 95  NNYNNNYNNYNKKLYYNINYIEQIPVPVPVPVYCG 129


>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding protein
           ASP6 protein.
          Length = 146

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = -2

Query: 87  MCLRLCVLIAAADRDNDSV 31
           MC   C++IA     ND +
Sbjct: 69  MCYMKCIMIATKAMKNDVI 87


>AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding
          protein protein.
          Length = 120

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = -2

Query: 87 MCLRLCVLIAAADRDNDSV 31
          MC   C++IA     ND +
Sbjct: 43 MCYMKCIMIATKAMKNDVI 61


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,342
Number of Sequences: 438
Number of extensions: 1150
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9885360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)