Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1952
         (665 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    22   4.6  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   4.6  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   4.6  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    21   8.0  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    21   8.0  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    21   8.0  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    21   8.0  

>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +2

Query: 17  NKFIKTTYNLYCDILYYNV 73
           N   K  YN  C  LYYN+
Sbjct: 93  NNNYKYNYNNNCKKLYYNI 111


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +1

Query: 508 LNYMSCCPLQ*SNVGYRIR 564
           + Y SCCP    ++ Y IR
Sbjct: 190 VEYYSCCPEPYPDITYEIR 208


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = +2

Query: 11  FRNKFIKTTYNLYCDILYYNV 73
           + N      YN  C  LYYN+
Sbjct: 338 YNNNNYNNNYNNNCKKLYYNI 358


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = +2

Query: 11  FRNKFIKTTYNLYCDILYYNV 73
           ++  +    YN  C  LYYN+
Sbjct: 96  YKYNYNNNNYNNNCKKLYYNI 116


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = +2

Query: 11  FRNKFIKTTYNLYCDILYYNV 73
           ++  +    YN  C  LYYN+
Sbjct: 96  YKYNYNNNNYNNNCKKLYYNI 116


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = +2

Query: 11  FRNKFIKTTYNLYCDILYYNV 73
           ++  +    YN  C  LYYN+
Sbjct: 96  YKYNYNNNNYNNNCKKLYYNI 116


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = +2

Query: 11  FRNKFIKTTYNLYCDILYYNV 73
           ++  +    YN  C  LYYN+
Sbjct: 96  YKYNYNNNNYNNNCKKLYYNI 116


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,859
Number of Sequences: 438
Number of extensions: 3236
Number of successful extensions: 18
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)