Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1950
         (680 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.0  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   4.7  
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    22   4.7  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    22   4.7  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    22   4.7  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    22   4.7  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   8.2  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 10/58 (17%), Positives = 24/58 (41%)
 Frame = +2

Query: 389 RRPQNDMSLESFIRAKYEQKKYIAKEWVPPQLPKVNWDKEIDEEMDRQKRKKKSATSS 562
           ++PQ     +   + + +Q++   + W   + P  +W    D  +D   +    + SS
Sbjct: 438 QQPQQQQQQQQQQQQQQQQQQQQQQHWPMEEEPAASWGSASDVTLDEAVKSPLGSVSS 495


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +2

Query: 509 IDEEMDRQKRKKKSATSSLGPLPAPAVADKK 601
           I   ++   RK + A  + GP   P V +KK
Sbjct: 184 ISTPVEAHLRKGRGAIGAYGPEKGPKVPEKK 214


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = -2

Query: 67  YDLARYKLLKYNEMKWVEELP 5
           Y+   YK L+Y  + ++E++P
Sbjct: 102 YNNNNYKKLQYYNINYIEQIP 122


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = -2

Query: 67  YDLARYKLLKYNEMKWVEELP 5
           Y+   YK L+Y  + ++E++P
Sbjct: 102 YNNNNYKKLQYYNINYIEQIP 122


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = -2

Query: 67  YDLARYKLLKYNEMKWVEELP 5
           Y+   YK L+Y  + ++E++P
Sbjct: 102 YNNNNYKKLQYYNINYIEQIP 122


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = -2

Query: 67  YDLARYKLLKYNEMKWVEELP 5
           Y+   YK L+Y  + ++E++P
Sbjct: 102 YNNNNYKKLQYYNINYIEQIP 122


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 248  HRNLGVHISKVKSVNLDSWTPEQVVSLQQ 334
            ++N+GV +S   SV L    P Q  + QQ
Sbjct: 1211 NKNVGVGVSNSGSVVLGKQQPSQQQTQQQ 1239


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,838
Number of Sequences: 438
Number of extensions: 4290
Number of successful extensions: 22
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)