Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1948
         (723 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   2.2  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   3.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.1  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   6.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   8.9  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          21   8.9  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   8.9  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +2

Query: 395 IILGKKTRGIDSL*CKWCNWNYK 463
           I+  K+ +G+ +   KW NW+ K
Sbjct: 249 ILAKKEIKGVPTYLIKWKNWDLK 271


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -2

Query: 272 SIITYTPVIININLPCRQTCFS 207
           SI  Y P I+ + + CR  C++
Sbjct: 198 SISFYVPCIVMLGIYCRLYCYA 219


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = +2

Query: 611 FKPRTTPDCCSDN-H*GRCATPRG-AREASSPAI 706
           +KP +TP C S N      A  +G A  ASSP +
Sbjct: 887 YKPASTPGCSSKNGEPTSAAFAQGFATAASSPGL 920


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 487 KDLMYFGRLVVPITPFASQAV 425
           + L YF  L+VP    AS AV
Sbjct: 230 RTLYYFFNLIVPCVLIASMAV 250


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 10/15 (66%), Positives = 11/15 (73%), Gaps = 1/15 (6%)
 Frame = +3

Query: 330 YKTQDSKVKT-DLKH 371
           YK +DSKVKT D  H
Sbjct: 590 YKIRDSKVKTLDASH 604


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 5/7 (71%), Positives = 5/7 (71%)
 Frame = -2

Query: 302 CCLTNWW 282
           CC T WW
Sbjct: 200 CCTTXWW 206


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +2

Query: 5   NRHEGFSVYMKCVV 46
           ++H GF++Y  CV+
Sbjct: 847 SKHIGFTMYTTCVI 860


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,015
Number of Sequences: 438
Number of extensions: 4343
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)