Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1938
         (680 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    23   2.7  
AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein pro...    22   4.7  
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    22   4.7  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    21   8.2  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    21   8.2  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    21   8.2  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    21   8.2  

>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 151 VTNK*VTFINNILHNAYRNYKK 86
           ++NK +   NN  +N Y NYKK
Sbjct: 85  LSNKTIHNNNNYNNNNYNNYKK 106


>AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein
           protein.
          Length = 105

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +1

Query: 541 WVCSAIYEKNTYYIGCKNNVPCAETLIKYKFESNRKYYSFTKLIRN 678
           W  ++    NTY    K NVP  ETL       +RK+ + T +  N
Sbjct: 46  WTFTSSSGDNTYTKTFKMNVPFEETLPSL---PDRKFQTVTSIEGN 88


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +1

Query: 541 WVCSAIYEKNTYYIGCKNNVPCAETLIKYKFESNRKYYSFTKLIRN 678
           W  ++    NTY    K NVP  ETL       +RK+ + T +  N
Sbjct: 48  WTFTSSSGDNTYTKTFKMNVPFEETLPSL---PDRKFQTVTSIEGN 90


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = -2

Query: 124 NNILHNAYRNYKKNLSMQDISIS*CYGQF 38
           NN     Y+NY  N+    + +   YG F
Sbjct: 110 NNNYKKLYKNYIINIEQIPVPVPVYYGNF 138


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = -2

Query: 124 NNILHNAYRNYKKNLSMQDISIS*CYGQF 38
           NN     Y+NY  N+    + +   YG F
Sbjct: 110 NNNYKKLYKNYIINIEQIPVPVPVYYGNF 138


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 124 NNILHNAYRNYKKNLSMQDISIS 56
           NN  +N Y NY K L  ++  I+
Sbjct: 331 NNYNNNNYNNYNKKLYYKNYIIN 353


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 124 NNILHNAYRNYKK 86
           NN  +N Y NYKK
Sbjct: 339 NNYNNNNYNNYKK 351


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,270
Number of Sequences: 438
Number of extensions: 4369
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)